Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m04
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-2|CAA93764.1|  326|Caenorhabditis elegans Hypothetical pr...    65   4e-11
U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical pr...    62   3e-10
Z81534-3|CAB04347.3|  328|Caenorhabditis elegans Hypothetical pr...    59   4e-09
Z48009-1|CAA88076.1|  329|Caenorhabditis elegans Hypothetical pr...    58   5e-09
Z66565-1|CAA91477.1|  324|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AL021175-8|CAA15970.2|  201|Caenorhabditis elegans Hypothetical ...    54   1e-07
AL021175-7|CAE54921.1|  329|Caenorhabditis elegans Hypothetical ...    54   1e-07
Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81064-1|CAB02962.2|  655|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U67954-1|AAB52605.2|  826|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF332207-1|AAK17978.1|  378|Caenorhabditis elegans nuclear recep...    28   6.0  
AF016445-12|AAC69062.1|  374|Caenorhabditis elegans Nuclear horm...    28   6.0  

>Z69902-2|CAA93764.1|  326|Caenorhabditis elegans Hypothetical
           protein C47D12.3 protein.
          Length = 326

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 28/59 (47%), Positives = 41/59 (69%)
 Frame = -3

Query: 573 FRAGREQPGTKLEQVIKAKQLYESAFHPDSGELQNVFGRMSFQMPGGCLITGAMLQWYR 397
           ++ G+  P   ++++ KAK LY+SAFHPD+GE   + GRMS Q+P   LITG ML +Y+
Sbjct: 57  YKQGKYDPNMTVDELWKAKTLYDSAFHPDTGEKMFILGRMSAQVPCNMLITGGMLTFYQ 115


>U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical
           protein C14F5.4 protein.
          Length = 319

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 28/58 (48%), Positives = 42/58 (72%)
 Frame = -3

Query: 570 RAGREQPGTKLEQVIKAKQLYESAFHPDSGELQNVFGRMSFQMPGGCLITGAMLQWYR 397
           R  +  P T LE++ ++++L +SAFHPD+GELQN  GRM F + GG ++ GAM+ WY+
Sbjct: 49  REKKPVPAT-LEELHRSQRLCQSAFHPDTGELQNFAGRMCFNVWGGTMLCGAMMIWYK 105


>Z81534-3|CAB04347.3|  328|Caenorhabditis elegans Hypothetical
           protein F37H8.4 protein.
          Length = 328

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 26/59 (44%), Positives = 36/59 (61%)
 Frame = -3

Query: 573 FRAGREQPGTKLEQVIKAKQLYESAFHPDSGELQNVFGRMSFQMPGGCLITGAMLQWYR 397
           ++ G+  P   + ++ KAK LY+S +HPD+GE     GRMS QMP   LI G +L  YR
Sbjct: 57  YKNGKVSPTLTVSELWKAKTLYDSTYHPDTGEKMFFLGRMSAQMPANMLINGMLLSLYR 115


>Z48009-1|CAA88076.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.2 protein.
          Length = 329

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 26/59 (44%), Positives = 37/59 (62%)
 Frame = -3

Query: 573 FRAGREQPGTKLEQVIKAKQLYESAFHPDSGELQNVFGRMSFQMPGGCLITGAMLQWYR 397
           ++ G   P   ++++ KAK LY+S +HPD+GE     GRMS QMPG  + TG +L  YR
Sbjct: 57  YKTGVISPTLTVDELWKAKTLYDSTYHPDTGEKMFFLGRMSAQMPGNMVTTGMLLGLYR 115


>Z66565-1|CAA91477.1|  324|Caenorhabditis elegans Hypothetical
           protein T04F8.1 protein.
          Length = 324

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/59 (44%), Positives = 35/59 (59%)
 Frame = -3

Query: 573 FRAGREQPGTKLEQVIKAKQLYESAFHPDSGELQNVFGRMSFQMPGGCLITGAMLQWYR 397
           +R G       L Q+ KAK + +SAFHP +GE   + GRMS Q+P    ITG ML +Y+
Sbjct: 57  YRKGSVSNDLTLNQLWKAKHVVDSAFHPSTGEKMMMVGRMSAQVPMNMAITGGMLTFYK 115


>AL021175-8|CAA15970.2|  201|Caenorhabditis elegans Hypothetical
           protein Y6E2A.9b protein.
          Length = 201

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 24/59 (40%), Positives = 35/59 (59%)
 Frame = -3

Query: 573 FRAGREQPGTKLEQVIKAKQLYESAFHPDSGELQNVFGRMSFQMPGGCLITGAMLQWYR 397
           ++ G   P   ++++  AK LY+S +HPD+GE     GRMS Q P   +ITG +L  YR
Sbjct: 57  YKKGIINPELTMDELWSAKILYDSVYHPDTGEKMFCLGRMSAQTPANMVITGMLLSCYR 115


>AL021175-7|CAE54921.1|  329|Caenorhabditis elegans Hypothetical
           protein Y6E2A.9a protein.
          Length = 329

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 24/59 (40%), Positives = 35/59 (59%)
 Frame = -3

Query: 573 FRAGREQPGTKLEQVIKAKQLYESAFHPDSGELQNVFGRMSFQMPGGCLITGAMLQWYR 397
           ++ G   P   ++++  AK LY+S +HPD+GE     GRMS Q P   +ITG +L  YR
Sbjct: 57  YKKGIINPELTMDELWSAKILYDSVYHPDTGEKMFCLGRMSAQTPANMVITGMLLSCYR 115


>Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical
           protein E02H4.2 protein.
          Length = 560

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 122 MLPPQVTCEYRYFNNR-NNRTQIEQAYLLGTFKTQHGLQRN 241
           + PP +T +YR  N R NNR      +     K QHG  +N
Sbjct: 191 LFPPDITSQYRKHNCRGNNRNSKTSNFRRNDRKNQHGHNQN 231


>Z81064-1|CAB02962.2|  655|Caenorhabditis elegans Hypothetical
           protein F16B12.1 protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 390 FDIVKSPELSWYRKFLRSS*NIYVFV 313
           +D+ K  E ++YRK L S  N+ VFV
Sbjct: 448 YDVFKESEFTFYRKHLPSEGNVEVFV 473


>U67954-1|AAB52605.2|  826|Caenorhabditis elegans Hypothetical
           protein F41D9.1 protein.
          Length = 826

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +2

Query: 398 LYHCNIAPVIRQPPGIWNDILPKTFCSSPLSGWNADS*SCFALITCSNFVPGCSRPALNI 577
           L +C+          +  DILP  F +  L G  AD          S  +  C  P LN 
Sbjct: 248 LLYCSEETTFWMMTALIEDILPPNFYTQTLLGLQADE-------RVSRHLMKCHVPDLNK 300

Query: 578 ELEKYD-QICKINIAFVCIIYTSTF 649
            LE Y+ ++  + ++++  ++ S F
Sbjct: 301 ALEDYEVEVSLLTVSWLLTLFGSVF 325


>AF332207-1|AAK17978.1|  378|Caenorhabditis elegans nuclear receptor
           NHR-57 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 500 ADS*SCFALITCSNFVPGCSRPALNIELEKYDQI 601
           A+S    +L +CS+    C+ P L++EL  YDQ+
Sbjct: 96  ANSPGIESLPSCSSSPASCNSPILSLELGDYDQM 129


>AF016445-12|AAC69062.1|  374|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 57 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 500 ADS*SCFALITCSNFVPGCSRPALNIELEKYDQI 601
           A+S    +L +CS+    C+ P L++EL  YDQ+
Sbjct: 92  ANSPGIESLPSCSSSPASCNSPILSLELGDYDQM 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,520,440
Number of Sequences: 27780
Number of extensions: 355895
Number of successful extensions: 688
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)