Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m04
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13750.1 68416.m01735 beta-galactosidase, putative / lactase,...    29   2.4  
At5g22355.1 68418.m02608 DC1 domain-containing protein contains ...    29   4.2  

>At3g13750.1 68416.m01735 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase precursor
           SP:P48980 from [Lycopersicon esculentum]
          Length = 847

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -3

Query: 582 NSMFRAGREQPGTKLEQVIKAKQLYESAFHP-DSGELQNVFGRMSFQM 442
           N  F+A  ++  TK+  ++KA++L+ES   P    +++N +G M +++
Sbjct: 151 NGPFKAQMQRFTTKIVNMMKAERLFESQGGPIILSQIENEYGPMEYEL 198


>At5g22355.1 68418.m02608 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain; similar to ULI3 [Arabidopsis
           thaliana] GI:17225050
          Length = 664

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 479 SCRMFSVECHSKCQAVVLLPVLCYSGTG 396
           S R F  +CHS+C+A ++L  LC   TG
Sbjct: 623 SSRPFCAKCHSRCRAPIILK-LCDPYTG 649


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,106,003
Number of Sequences: 28952
Number of extensions: 309491
Number of successful extensions: 523
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)