Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m03
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.46 
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    27   2.5  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    26   5.7  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    25   9.9  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.9  

>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
 Frame = +2

Query: 239 SLIGGYVK-HPLI--QENMHQIVLSPIYFLILFGLYSVSVILFRVLTFN 376
           +LIG  ++  PLI  Q+N+  + LS + FLIL  +Y++S++    L F+
Sbjct: 37  ALIGASMEVKPLIVTQDNLSTLALSGLVFLILGMIYTISLLQSNFLFFS 85


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 281 NMHQIVLSPIYFLILFGLYSVSVILFRVLTFNNCE 385
           N   +VL  ++FL++FGLYS ++IL  +L  N  +
Sbjct: 12  NYFPLVLR-LFFLVVFGLYSFTLIL-HLLVINRVD 44


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +3

Query: 477 LNVCLCLY--MFN*TKNMVFGS 536
           LNVCLCL+  + N  K ++FGS
Sbjct: 46  LNVCLCLFFAIANALKTLLFGS 67


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 383 EEAAKELQREIIEAKKDLHE 442
           EE A+E+Q ++ +A  D+HE
Sbjct: 258 EETAEEIQAKVNDASADVHE 277


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 146  NNIKLENYATIRMTKLMEWISLCSAF 223
            N+   ENY  I +  LME +++C++F
Sbjct: 1329 NDEDKENYIRILLLPLMECMAICASF 1354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,610
Number of Sequences: 5004
Number of extensions: 53654
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)