BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11m03 (672 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_0754 - 31515939-31515998,31516372-31516479,31516575-315166... 42 4e-04 02_05_0623 + 30446420-30446525,30446635-30446715,30446811-304469... 34 0.090 06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092,816... 28 7.8 03_06_0143 + 31962241-31962291,31962385-31962506,31962572-319626... 28 7.8 >02_05_0754 - 31515939-31515998,31516372-31516479,31516575-31516695, 31517309-31517370 Length = 116 Score = 41.9 bits (94), Expect = 4e-04 Identities = 18/51 (35%), Positives = 33/51 (64%) Frame = +2 Query: 299 LSPIYFLILFGLYSVSVILFRVLTFNNCEEAAKELQREIIEAKKDLHERGL 451 L PIY ++ G Y + ++ F ++ F C + A LQ++I+EAK+ L ++G+ Sbjct: 61 LLPIYLVVALGCYGLFMVGFGLMFFPTCPQEAVLLQQDILEAKEFLSKKGV 111 >02_05_0623 + 30446420-30446525,30446635-30446715,30446811-30446987, 30447629-30447799,30448239-30448448,30448634-30448722, 30449318-30450010 Length = 508 Score = 34.3 bits (75), Expect = 0.090 Identities = 22/56 (39%), Positives = 31/56 (55%) Frame = -1 Query: 447 PLSCKSFLASIISLCNSFAASSQLLNVKTLKSMTLTEYKPKSIRKYMGDKTI*CMF 280 P S S+ A ++S S AASS + + +LKS T T KS+ KY G T+ +F Sbjct: 27 PASASSYPAKVVSGFLSNAASSVMKRLWSLKSTTKTGSGGKSMVKYEGGYTVETVF 82 >06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092, 8164166-8164213,8164516-8164671,8164747-8164843, 8164942-8164984,8165375-8165442,8165533-8165617, 8165698-8165746,8165968-8166040,8166119-8166179, 8167114-8167180,8167400-8167453,8167537-8167665, 8168192-8168255,8168366-8168439,8168523-8168576, 8168696-8168764,8169394-8169483,8169656-8169763, 8169876-8169923 Length = 563 Score = 27.9 bits (59), Expect = 7.8 Identities = 13/49 (26%), Positives = 27/49 (55%) Frame = -1 Query: 453 LKPLSCKSFLASIISLCNSFAASSQLLNVKTLKSMTLTEYKPKSIRKYM 307 +K L ++ L ++S +F + +LN +TLK ++ P ++ K+M Sbjct: 213 IKDLDPETTLVVVVS--KTFTTAETMLNARTLKEWIVSSLGPDAVAKHM 259 >03_06_0143 + 31962241-31962291,31962385-31962506,31962572-31962671, 31962775-31962822,31963096-31963251,31963330-31963426, 31963525-31963567,31963970-31964037,31964139-31964223, 31964297-31964345,31964566-31964638,31964708-31964768, 31965417-31965483,31965709-31965762,31965854-31965982, 31966485-31966548,31966655-31966728,31966793-31966867, 31966972-31967040,31967759-31967848,31968014-31968121, 31968251-31968298 Length = 576 Score = 27.9 bits (59), Expect = 7.8 Identities = 13/49 (26%), Positives = 27/49 (55%) Frame = -1 Query: 453 LKPLSCKSFLASIISLCNSFAASSQLLNVKTLKSMTLTEYKPKSIRKYM 307 +K L ++ L ++S +F + +LN +TLK ++ P ++ K+M Sbjct: 219 IKDLDPETTLVVVVS--KTFTTAETMLNARTLKEWIVSSLGPDAVAKHM 265 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,275,555 Number of Sequences: 37544 Number of extensions: 270296 Number of successful extensions: 464 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 458 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 464 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1703141568 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -