Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m03
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_57283| Best HMM Match : HEAT (HMM E-Value=6.3)                      28   7.9  

>SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +2

Query: 326 FGLYSVSVILFRVLTFNNCEEAAKELQR 409
           F  YS++V+ +RV TFN+C EA+  LQ+
Sbjct: 807 FLCYSLAVVGYRVATFNDCVEASDSLQK 834


>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/44 (29%), Positives = 29/44 (65%)
 Frame = +2

Query: 269 LIQENMHQIVLSPIYFLILFGLYSVSVILFRVLTFNNCEEAAKE 400
           L+  + HQ+ +S +  + + G+  V++ILF  LTF++  ++A++
Sbjct: 74  LLGVSYHQVSVSKVKKVTIAGITLVAIILFFSLTFHSARKSAEQ 117


>SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1529

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 257  VKHPLIQENMHQIVLSPIYFLILFGLYSVSVILFRVLTFNNCEEAAKELQREI 415
            V HP ++      + S  Y L++   YS S +L+R   FN  +   K++Q+E+
Sbjct: 1397 VPHPTLERPGRGPLPSGEYLLVVVDYYS-SGLLYRAFVFNITQAEKKDIQQEL 1448


>SB_57283| Best HMM Match : HEAT (HMM E-Value=6.3)
          Length = 378

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/62 (22%), Positives = 35/62 (56%)
 Frame = +2

Query: 170 ATIRMTKLMEWISLCSAFFAVWYSLIGGYVKHPLIQENMHQIVLSPIYFLILFGLYSVSV 349
           A+ +M+ +ME ++LC  +  + + L+  Y +H  + ++   + L  +Y    +GL+S + 
Sbjct: 253 ASSKMSPMMETVNLCVQYVDIRFILL--YNRHETLPQS---LFLFSVYSTWTYGLFSCTT 307

Query: 350 IL 355
           ++
Sbjct: 308 VM 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,887,179
Number of Sequences: 59808
Number of extensions: 351987
Number of successful extensions: 596
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)