Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m03
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48140.1 68414.m05372 dolichol-phosphate mannosyltransferase-...    40   0.001
At3g50660.1 68416.m05541 steroid 22-alpha-hydroxylase (CYP90B1) ...    31   0.92 
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    28   6.5  
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ...    28   6.5  
At5g10290.1 68418.m01194 leucine-rich repeat family protein / pr...    27   8.6  
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    27   8.6  

>At1g48140.1 68414.m05372 dolichol-phosphate
           mannosyltransferase-related contains weak similarity to
           Swiss-Prot:Q9P2X0 dolichol-phosphate mannosyltransferase
           subunit 3 (Dolichol-phosphate mannose synthase subunit
           3, Dolichyl-phosphate beta-D- mannosyltransferase
           subunit 3, Mannose-P-dolichol synthase subunit 3, MPD
           synthase subunit 3, DPM synthase complex subunit 3,
           Prostin 1 [Homo sapiens]
          Length = 89

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 26/90 (28%), Positives = 44/90 (48%)
 Frame = +2

Query: 182 MTKLMEWISLCSAFFAVWYSLIGGYVKHPLIQENMHQIVLSPIYFLILFGLYSVSVILFR 361
           M  +++ +SL  A  A W  L+        I    H  +L PIYF++  G Y + ++   
Sbjct: 1   MKHIVKILSLLVAISAFWIGLL-----QAAIIPRSHTWLL-PIYFVVSLGCYGLLMVGVG 54

Query: 362 VLTFNNCEEAAKELQREIIEAKKDLHERGL 451
           ++ F  C + A  LQ++I EAK     +G+
Sbjct: 55  LMQFPTCPQEAVLLQKDIAEAKDFFKHKGV 84


>At3g50660.1 68416.m05541 steroid 22-alpha-hydroxylase (CYP90B1)
           (DWF4) identical to gi:2935342
          Length = 513

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
 Frame = +2

Query: 242 LIGGYVKHP-LIQENMHQIVLSPIYFLILFGLYSVSVILFRVLTF-NNCEEAAKELQREI 415
           L+G  +KH  L  E +  ++LS    L+  G  + SV +   + F   C +A +EL+ E 
Sbjct: 286 LLGWVLKHSNLSTEQILDLILS----LLFAGHETSSVAIALAIFFLQACPKAVEELREEH 341

Query: 416 IE---AKKDLHERGLRW 457
           +E   AKK+L E  L W
Sbjct: 342 LEIARAKKELGESELNW 358


>At1g79280.1 68414.m09242 expressed protein weak similarity to
           Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 383 EEAAKELQREIIEAKKDLHE 442
           EE  K+LQRE  EAKK+L E
Sbjct: 841 EEHIKQLQREWAEAKKELQE 860


>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
           sylvestris]
          Length = 293

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 132 RFHHNEQPKFKTLFSIT*FVYLYI*VFKMLKLHVNYDKSYH 10
           R  HN  PK+KTL S + + YL     + LKL  +   S+H
Sbjct: 15  RSSHNAIPKYKTLISSSSYSYL-----ESLKLQFSSSNSFH 50


>At5g10290.1 68418.m01194 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 613

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 248 GGYVKHPLIQENMHQIVLSPIYFLILFGLYS-VSVILFRVLTFNNCEEAAKELQREI 415
           GG   HP +    H    S     I+ G+ + V+V+LF +L F  C++  K  +R++
Sbjct: 202 GGRQPHPCVSAVAHSGDSSKPKTGIIAGVVAGVTVVLFGILLFLFCKDRHKGYRRDV 258


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 359 RVLTFNNCEEAAKELQREIIEAK 427
           R  TF+NC E + ++ REI+EA+
Sbjct: 897 RHCTFSNCFEISPDIVREILEAR 919


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,252,361
Number of Sequences: 28952
Number of extensions: 252831
Number of successful extensions: 492
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)