Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11m02
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 27 1.6
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 27 2.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 6.5
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa... 25 6.5
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr... 25 6.5
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 25 6.5
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 6.5
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 25 8.6
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 8.6
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 8.6
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 458 EPWHGQSQTSARSSPTTA 405
+PWH S A SSPT+A
Sbjct: 80 QPWHSNSAAPASSSPTSA 97
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 222 VLSDSRRNQSLSADLLFCTYFMSAWYSSFNLFTHSSLSL 106
VLS SR SL D+L + W S+N+ SSL L
Sbjct: 351 VLSQSRNIFSLYIDILMEALRRTEWQESYNVSHDSSLPL 389
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 8 LECFND*YPLIMVDEGTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQ 172
+ C N +P I+V + + LL AG + KE+ VN + + +Y Q
Sbjct: 1863 ITCINKKWPCILVGDTATGKTCILRLLAAIAGAKIKEMAVNSDTDTMDLIGEYEQ 1917
>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
Uch1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 6.5
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 278 FDLEFDIPITYPKTAPEIALPGLDGKTAKMYRGGKICLTDHFKPLW-ARNVPR----FGI 442
F LE +IP P+ + T +Y+G +I D K LW + +P G+
Sbjct: 30 FSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKGSRILPKDSDKVLWYPQTIPNACGTIGL 88
Query: 443 AHAMALG 463
HA++ G
Sbjct: 89 LHAVSNG 95
>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 6.5
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 32 PLIMVD-EGTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADNDWFRL 208
PL+ +D E T + L++ A D L ++E++ A+IK + S NDW
Sbjct: 7 PLVWIDCEMTGLEVGKHVLMEVAAIITDGNL--RPVEEKFDAVIKLDEKQLSEMNDWCIE 64
Query: 209 ESDKTG 226
+ K+G
Sbjct: 65 QHGKSG 70
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 466 QPKSHGMGNPKPRHVPRPQRLEMI 395
QP+ +G NP+P +PQR M+
Sbjct: 446 QPQQNGFFNPQPTGYMQPQRTGMM 469
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 390 RHILPPRYIFAVLPSRPGRAISGAV 316
R I PPR + + + S GR +SG++
Sbjct: 65 RPIPPPRQVSSTIGSSTGRKVSGSI 89
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 396 SVRHILPPRYIFAVLPSRPGRA 331
SVR++LP R + A+ S+P A
Sbjct: 466 SVRYVLPNRLLIAIAASKPVEA 487
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 509 LSRSSPVFPPPARDPAQEPWHGQSQTSARSSP 414
+ SS + PPP+ DP P S + RSSP
Sbjct: 89 IDSSSSMLPPPSSDPFSSP---LSSSLHRSSP 117
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 125 VNRLKEEYQALIKYVQNNKSADNDWFRLESDKTGTRWF 238
V + KEE + L Y + KS N W R +++ G ++
Sbjct: 1367 VQQAKEEMETLFSYKTSGKSLLNIW-RTPNERPGRHFY 1403
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,921
Number of Sequences: 5004
Number of extensions: 57412
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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