Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11m02
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28801| Best HMM Match : No HMM Matches (HMM E-Value=.) 209 2e-54
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82) 32 0.32
SB_13249| Best HMM Match : Toxin_24 (HMM E-Value=8.7) 30 1.7
SB_10087| Best HMM Match : VWA (HMM E-Value=4.00001e-40) 29 3.0
SB_8854| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 28 5.2
SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023) 28 6.9
SB_45895| Best HMM Match : RVT_1 (HMM E-Value=0.00031) 28 6.9
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_27722| Best HMM Match : RVT_1 (HMM E-Value=0.00011) 28 6.9
SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37) 28 6.9
SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4) 27 9.1
>SB_28801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 209 bits (510), Expect = 2e-54
Identities = 92/114 (80%), Positives = 103/114 (90%)
Frame = +2
Query: 32 PLIMVDEGTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADNDWFRLE 211
P MVDE TK+TL++IPLL+TKAGPRD + WV+RLKEEY +LIKYV NNK ADNDWFRLE
Sbjct: 28 PSKMVDEATKKTLAAIPLLKTKAGPRDGKDWVDRLKEEYTSLIKYVSNNKEADNDWFRLE 87
Query: 212 SDKTGTRWFGKCWFVHNLLKYEFDLEFDIPITYPKTAPEIALPGLDGKTAKMYR 373
S+K GTRWFGKCW++HNLLKYEFD+EFDIPITYP TAPEIALP LDGKTAKMYR
Sbjct: 88 SNKEGTRWFGKCWYIHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYR 141
>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
Length = 646
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 509 LSRSSPVFPPPARDPAQEPWHGQS-QTSARSSPTTA*ND 396
L R SP PPP R P + G+S + S S PT + ND
Sbjct: 605 LGRQSPESPPPPRTPGHDSSSGESGEISLPSPPTPSNND 643
>SB_13249| Best HMM Match : Toxin_24 (HMM E-Value=8.7)
Length = 152
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 83 LLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADNDWFRLESDK 220
L+Q GP++K V+ +KE +QAL ++ + K +FR++ K
Sbjct: 92 LMQAAGGPQEKMKNVHIVKEHFQALEQFEEAEKREYRFFFRVDYAK 137
>SB_10087| Best HMM Match : VWA (HMM E-Value=4.00001e-40)
Length = 357
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +2
Query: 38 IMVDEGTKRTLSSIPLLQTKAGPRD--KELWVNRLKEEYQALIKYVQNNKSADNDWFRLE 211
+ +D+GTK+ L I + K P ++L+ N + + + + SA W + +
Sbjct: 30 VQLDDGTKQILKKIGCYKDKPFPNRALRDLYHNHRWDIDWSQWPDMTHVISACASWAKRK 89
Query: 212 S--DKTGTRWFGKCW 250
+ DK G +++G+CW
Sbjct: 90 NYNDKFGVQFYGECW 104
>SB_8854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -1
Query: 565 QCSICSFRFLSLLFVRDNAFLDHLRYFHRQPGTQPKSHGMGNPKPRHVPRPQRLEMISEA 386
+CSIC+++F+S +R + + H YF + G Q + G P + +P + +
Sbjct: 280 KCSICNWKFISSSNLRTHIRIHH-SYFTDKAGNQ-VTQPNGKPINPDLAKPDTMPQTQQV 337
Query: 385 Y 383
Y
Sbjct: 338 Y 338
>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1902
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 522 YVTTPFSIISGISTASQGPSPRAMAWAIPNLG-TFLAH 412
+VTT S S + +S+GP+P WAI + G F++H
Sbjct: 577 WVTT-LSTASARANSSEGPAPYKALWAITSCGDVFVSH 613
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 28.3 bits (60), Expect = 5.2
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Frame = +2
Query: 56 TKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADNDWFRLESDKTG--- 226
T T SIP + + GP D E+ RL EE + I+ ++NNK+ +D E K G
Sbjct: 1250 TTTTNLSIPKCRDQTGPLDSEI---RL-EEVKLAIENLKNNKAPGHDNILNELLKYGKDT 1305
Query: 227 -----TRWFGKCWFVHNLLKYEFDLEFDIPI 304
TR F F + E++L F IPI
Sbjct: 1306 LLPYLTRLF-NIIFRSGVFPQEWNLGFIIPI 1335
>SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 52 RH*EDFEQHPFTAD*SRTQGQGAMGEQIKRRVPSAHK 162
RH D+E H F RT+ M ++++ PS HK
Sbjct: 105 RHDRDWEIHDFDKGTERTRASDNMLSLVRQKGPSGHK 141
>SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)
Length = 836
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 56 TKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADND 196
T T SIP + + GP D E+ RL EE + I+ ++NNK+ +D
Sbjct: 607 TTTTNLSIPKCRDQTGPLDSEI---RL-EEVKLAIENLKNNKAPGHD 649
>SB_45895| Best HMM Match : RVT_1 (HMM E-Value=0.00031)
Length = 313
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 56 TKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADND 196
T T SIP + + GP D E+ RL EE + I+ ++NNK+ +D
Sbjct: 6 TTTTNLSIPKCRDQTGPLDSEI---RL-EEVKLAIENLKNNKAPGHD 48
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 56 TKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADND 196
T T SIP + + GP D E+ RL EE + I+ ++NNK+ +D
Sbjct: 970 TTTTNLSIPKCRDQTGPLDSEI---RL-EEVKLAIENLKNNKAPGHD 1012
>SB_27722| Best HMM Match : RVT_1 (HMM E-Value=0.00011)
Length = 315
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 56 TKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADND 196
T T SIP + + GP D E+ RL EE + I+ ++NNK+ +D
Sbjct: 6 TTTTNLSIPKCRDQTGPLDSEI---RL-EEVKLAIENLKNNKAPGHD 48
>SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 56 TKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADND 196
T T SIP + + GP D E+ RL EE + I+ ++NNK+ +D
Sbjct: 233 TTTTNLSIPKCRDQTGPLDSEI---RL-EEVKLAIENLKNNKAPGHD 275
>SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37)
Length = 458
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 56 TKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADND 196
T T SIP + + GP D E+ RL EE + I+ ++NNK+ +D
Sbjct: 6 TTTTNLSIPKCRDQTGPLDSEI---RL-EEVKLAIENLKNNKAPGHD 48
>SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4)
Length = 402
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = -3
Query: 512 RLSRSSPVFPPPARDPAQEPWHGQSQTSARSSPT 411
R S P FPPP + W ++++ PT
Sbjct: 343 RERESKPTFPPPLKPSPNRRWRAPARSATVGKPT 376
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,840,960
Number of Sequences: 59808
Number of extensions: 458873
Number of successful extensions: 1694
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1693
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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