Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m02
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27530.1 68414.m03356 expressed protein Similar to gb|AF15188...   256   6e-69
At5g10020.1 68418.m01161 leucine-rich repeat transmembrane prote...    34   0.065
At3g62590.1 68416.m07031 lipase class 3 family protein contains ...    32   0.26 
At5g43690.1 68418.m05340 sulfotransferase family protein similar...    30   1.1  
At5g16620.1 68418.m01946 hydroxyproline-rich glycoprotein family...    27   7.4  
At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative ...    27   9.8  
At3g42910.1 68416.m04500 expressed protein ; expression supporte...    27   9.8  
At1g61860.1 68414.m06980 protein kinase, putative similar to pro...    27   9.8  
At1g27940.1 68414.m03423 multidrug resistance P-glycoprotein, pu...    27   9.8  

>At1g27530.1 68414.m03356 expressed protein Similar to gb|AF151884
           CGI-126 protein from Homo sapiens. EST gb|Z18048 comes
           from this gene
          Length = 174

 Score =  256 bits (628), Expect = 6e-69
 Identities = 112/160 (70%), Positives = 128/160 (80%), Gaps = 1/160 (0%)
 Frame = +2

Query: 47  DEGTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADNDWFRLE-SDKT 223
           D  TK TL+ IPLL TKAGPRD   W  RLKEEY++LI Y Q NKS DNDWFR+  S+  
Sbjct: 5   DPNTKSTLTRIPLLTTKAGPRDGAAWTQRLKEEYKSLIAYTQMNKSNDNDWFRISASNPE 64

Query: 224 GTRWFGKCWFVHNLLKYEFDLEFDIPITYPKTAPEIALPGLDGKTAKMYRGGKICLTDHF 403
           GTRW GKCW+VHNLLKYEFDL+FDIPITYP TAPE+ LP +DGKT KMYRGGKICLT HF
Sbjct: 65  GTRWTGKCWYVHNLLKYEFDLQFDIPITYPATAPELELPEIDGKTQKMYRGGKICLTVHF 124

Query: 404 KPLWARNVPRFGIAHAMALGLGPWLAVEIPEMIEKGVVTY 523
           KPLWA+N PRFGIAHA+ LGL PWLA EIP +++ G + +
Sbjct: 125 KPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGAIKH 164


>At5g10020.1 68418.m01161 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase ERECTA,
           Arabidopsis thaliana, EMBL:AC004484
          Length = 1048

 Score = 34.3 bits (75), Expect = 0.065
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = -3

Query: 581 HIILYTMFNLFISLPQSSLCT*QRLSRSSPVFPPPARDPAQEPWHGQSQTSARSSPTTA* 402
           H + +   +L + L  ++  T   L RS   F    RD         S TS+ + P+T  
Sbjct: 3   HFLTFCFLSLLLLLHGANAVTETEL-RSLLEFRKGIRDETSHQRISWSDTSSLTDPSTCP 61

Query: 401 NDQ*GISCHLGTSS-LSYRQDRAGL 330
           ND  GISC   T S ++   DR GL
Sbjct: 62  NDWPGISCDPETGSIIAINLDRRGL 86


>At3g62590.1 68416.m07031 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 649

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +2

Query: 137 KEEY-QALIKYVQNNKSADNDWFRLESDKTGTRWF 238
           KEE  QA+   +++N+S   +WF  + DK+GTR+F
Sbjct: 283 KEEVKQAVADDLKSNRSPPCEWFVCDDDKSGTRFF 317


>At5g43690.1 68418.m05340 sulfotransferase family protein similar to
           steroid sulfotransferase 3 [Brassica napus] GI:3420008,
           steroid sulfotransferase 1 [Brassica napus] GI:3420004;
           contains Pfam profile PF00685: Sulfotransferase domain
          Length = 331

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
 Frame = +2

Query: 44  VDEGTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADNDWFRLESDKT 223
           + E TK  +SS+P  Q       K           QA+I Y +N +  D D       K+
Sbjct: 16  LSEETKTLISSLPTYQDSHVKLCKYQGCWYYHNTLQAVINYQRNFQPQDTDIILASFPKS 75

Query: 224 GTRWF-GKCWFVHNLLKYEFDLEFDIPITYP 313
           GT W       +    K  FD   D P+T+P
Sbjct: 76  GTTWLKALSVAIVERSKQPFD---DDPLTHP 103


>At5g16620.1 68418.m01946 hydroxyproline-rich glycoprotein family
           protein contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 447

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 488 FP-PPARDPAQEPWHGQSQTSARSSPTTA 405
           FP PP   PA  P+  QSQ+S  +   TA
Sbjct: 165 FPFPPQTSPASSPFQSQSQSSGATVDVTA 193


>At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative
           similar to SP|O60015 Ubiquitin-conjugating enzyme E2-21
           kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
           carrier protein) {Pichia angusta}; contains Pfam profile
           PF00179: Ubiquitin-conjugating enzyme
          Length = 157

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
 Frame = +2

Query: 131 RLKEEYQALIKYVQNNKSADNDWFRLESDKTGTRWFGKCWFVHNLLKYE---FDLEFDIP 301
           RL +EY    K VQ  K AD D   +  D    +W            YE   F L F +P
Sbjct: 7   RLFKEY----KEVQREKVADPDIQLICDDTNIFKWTALIKGPSET-PYEGGVFQLAFSVP 61

Query: 302 ITYPKTAPEIALPGLDGKTAKMYRGGKICLTDHFKPLWA 418
             YP   P++            ++ G+ICL D  K  W+
Sbjct: 62  EPYPLQPPQVRFLTKIFHPNVHFKTGEICL-DILKNAWS 99


>At3g42910.1 68416.m04500 expressed protein ; expression supported
           by MPSS
          Length = 649

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 463 AGSLAGGGNTGDDRERRCHVQRED*GSEMNK 555
           AG + GGGN  DD + +   + ED  S+ ++
Sbjct: 322 AGKVLGGGNNDDDEDPKLLAEGEDEDSQRDR 352


>At1g61860.1 68414.m06980 protein kinase, putative similar to
           protein kinase GI:9294282 from [Arabidopsis thaliana]
          Length = 389

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = +2

Query: 50  EGTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADNDWFRLESDKTGT 229
           +GT+   + + +L     P    L    +++E + L+     N S ++  F L       
Sbjct: 122 QGTREFFAEVMVLSLAQHPNLVNLIGYCVEDEQRVLVYEFMPNGSLEDHLFDLPEGSPSL 181

Query: 230 RWFGKCWFVHNLLK-YEFDLEF-DIPITY 310
            WF +   VH   K  E+  ++ D P+ Y
Sbjct: 182 DWFTRMRIVHGAAKGLEYLHDYADPPVIY 210


>At1g27940.1 68414.m03423 multidrug resistance P-glycoprotein,
            putative similar to mdr-like P-glycoprotein atpgp1
            GI:3849833 from [Arabidopsis thaliana]
          Length = 1245

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 192  LSADLLFCTYFMSAWYSSFNLFTHSSLSLGPAL 94
            LS  L FC+Y +  WY S  L  H   + G ++
Sbjct: 913  LSQFLAFCSYALGLWYVSV-LINHKETNFGDSI 944


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,797,690
Number of Sequences: 28952
Number of extensions: 315605
Number of successful extensions: 1078
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)