Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m01
         (471 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)                   40   8e-04
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)                   28   4.5  
SB_18129| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)               27   7.8  
SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)                       27   7.8  

>SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)
          Length = 75

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = +2

Query: 191 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 313
           +  RI++ M+ND+E+ G L  +D  +NM+L DV E  +T E
Sbjct: 24  LDERIYVKMRNDRELRGRLHAYDQHLNMILSDVEETITTVE 64


>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1662

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -2

Query: 275 TCLQNHRILVEFQPFLCRFSL*YECGNQCICQQVPEAVTCLDSVMNFASFFF 120
           TCL+N RIL +F  FL  F   +   +     Q+  AV   D V+   S FF
Sbjct: 563 TCLENLRILAKFLGFLV-FEPYHGAASSTHESQIAMAVKMRDKVLPVESLFF 613


>SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)
          Length = 443

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/43 (27%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +2

Query: 197 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRK 322
           +++ I  +N+++++  ++ FD   NM+L++V E +  TP+  K
Sbjct: 30  TQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGK 72


>SB_18129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 266 VNMLLDDVTEYESTPEGRKI--TKLDQILLNGNNIAMLVPGGEMPG 397
           V +LL  V+ Y     G  +  T  D++ + G+++ +  P G++PG
Sbjct: 235 VEVLLTAVSGYLELEGGGSLNLTPYDEVNITGSSLNLYTPNGDVPG 280


>SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1407

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 251 LVEFQPFLCRFSL*YECGNQCICQQVPEA 165
           ++ + P + + +L Y CGN  +C  + EA
Sbjct: 799 VIRYSPAVVKKALQYACGNALVCDTMEEA 827


>SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)
          Length = 647

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 270 FTKSSNPCRVPTISLSFFIMI*MREPMHLSTS-SRGSNVFGFGNE 139
           FT+SS+ C   T S+ FF  +  RE M+  T+    SN++G  +E
Sbjct: 277 FTRSSSVCGTGTTSV-FFSKVTPREQMNQITAFIDASNIYGSSDE 320


>SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)
          Length = 198

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 242 TLQGFDDFVNMLLDDVTEYESTPEGRK 322
           T  GFD+++N++LD+  E     + RK
Sbjct: 121 TTHGFDEYMNLVLDEAEEVHLKTKTRK 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,957,315
Number of Sequences: 59808
Number of extensions: 266662
Number of successful extensions: 668
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)