Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m01
         (471 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   5.0  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   8.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.8  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +2

Query: 314 GRKITKLDQILLNGNNI 364
           G+KI++L++ +LNG  +
Sbjct: 282 GKKISELEKEMLNGQKL 298


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 85 NDNQLVDYLIS*SIVLKNNF*FVFWNYY 2
          N NQ++ + +  SI  K++   ++W+ Y
Sbjct: 16 NQNQMMIWALDCSIKPKDHNGSIYWSMY 43


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 258 SNPCRVPTI 232
           SNPC+ PTI
Sbjct: 67  SNPCKHPTI 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,908
Number of Sequences: 438
Number of extensions: 2498
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)