Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11m01
(471 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 116 8e-27
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 42 2e-04
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 41 4e-04
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 39 0.001
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 38 0.003
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 38 0.003
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 38 0.003
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 38 0.003
At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 38 0.003
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 38 0.003
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 33 0.098
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 33 0.098
At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putati... 33 0.098
At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putati... 33 0.098
At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7) c... 31 0.52
At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 30 0.69
At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2, put... 29 1.2
At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2, put... 29 1.2
At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2, put... 29 1.2
At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2, put... 29 1.2
At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D, puta... 28 2.8
At5g63930.1 68418.m08028 leucine-rich repeat transmembrane prote... 28 3.7
At1g07110.1 68414.m00756 fructose-6-phosphate 2-kinase / fructos... 28 3.7
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi... 27 8.5
At4g27240.1 68417.m03911 zinc finger (C2H2 type) family protein ... 27 8.5
>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm5 [Homo sapiens]
SWISS-PROT:Q9Y4Y9
Length = 88
Score = 116 bits (279), Expect = 8e-27
Identities = 51/69 (73%), Positives = 63/69 (91%)
Frame = +2
Query: 179 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 358
+D+CIGS+I +IMK DKE+VG L+GFD +VNM+L+DVTEYE T EGR++TKLDQILLNGN
Sbjct: 14 IDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGN 73
Query: 359 NIAMLVPGG 385
NIA+LVPGG
Sbjct: 74 NIAILVPGG 82
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/63 (31%), Positives = 38/63 (60%)
Frame = +2
Query: 200 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLVP 379
+I + + D + G + GFD+++N++LD+ E + RK L +ILL G+NI +++
Sbjct: 28 QIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRK--PLGRILLKGDNITLMMN 85
Query: 380 GGE 388
G+
Sbjct: 86 AGK 88
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 41.1 bits (92), Expect = 4e-04
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +2
Query: 200 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLVP 379
+I + + D + G + GFD+++N++LD+ E RK L +ILL G+NI +++
Sbjct: 28 QIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRK--PLGRILLKGDNITLMMN 85
Query: 380 GGE 388
G+
Sbjct: 86 TGK 88
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/60 (30%), Positives = 36/60 (60%)
Frame = +2
Query: 185 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 364
K + ++ I + ++ +VGTL+GFD F+N+++D+ E G T + +++ GN+I
Sbjct: 12 KYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV----NGDDKTDIGMVVIRGNSI 67
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/60 (28%), Positives = 35/60 (58%)
Frame = +2
Query: 185 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 364
K + ++ I + ++ + GTL+GFD F+N+++D+ E G T + +++ GN+I
Sbjct: 12 KYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVIRGNSI 67
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +2
Query: 191 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 313
I RI++ +++D+E+ G L FD +NM+L DV E +T E
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 37.9 bits (84), Expect = 0.003
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Frame = +2
Query: 191 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTP--EGRKITK-------LDQI 343
I R+ + +++ +++VG FD +N++L D E+ P +G+KI + L +
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLGLV 72
Query: 344 LLNGNN-IAMLVPGGEMPGES 403
LL G I+M V G P ES
Sbjct: 73 LLRGEEVISMTVEGPPPPEES 93
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 37.9 bits (84), Expect = 0.003
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Frame = +2
Query: 191 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTP--EGRKITK-------LDQI 343
I R+ + +++ +++VG FD +N++L D E+ P +G+KI + L +
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLGLV 72
Query: 344 LLNGNN-IAMLVPGGEMPGES 403
LL G I+M V G P ES
Sbjct: 73 LLRGEEVISMTVEGPPPPEES 93
>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 98
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +2
Query: 191 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 313
+ RI++ +++D+E+ G L FD +NM+L DV E +T E
Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 37.9 bits (84), Expect = 0.003
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +2
Query: 203 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRKITKLDQILLNGNNIAML 373
I +I + + +VG L+GFD N++LD+ E ST EG + L ++ G+NI ++
Sbjct: 15 ISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVI 72
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 33.1 bits (72), Expect = 0.098
Identities = 13/58 (22%), Positives = 32/58 (55%)
Frame = +2
Query: 200 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 373
++ +++++ ++++GTL+ FD F N +L+ E E L ++ G N+ ++
Sbjct: 22 KLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGENVVLI 79
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 33.1 bits (72), Expect = 0.098
Identities = 13/58 (22%), Positives = 32/58 (55%)
Frame = +2
Query: 200 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 373
++ +++++ ++++GTL+ FD F N +L+ E E L ++ G N+ ++
Sbjct: 22 KLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGENVVLI 79
>At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 33.1 bits (72), Expect = 0.098
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +2
Query: 185 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY 298
K + + + + +++ GTL+G+D +N++LD+ E+
Sbjct: 13 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF 50
>At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 33.1 bits (72), Expect = 0.098
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +2
Query: 185 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY 298
K + + + + +++ GTL+G+D +N++LD+ E+
Sbjct: 13 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF 50
>At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7)
contains Pfam profiles: PF05033: Pre-SET motif, PF00856
SET domain; identical to cDNA SUVH7 (SUVH7) GI:13517754
Length = 693
Score = 30.7 bits (66), Expect = 0.52
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 287 HRLVTCLQNHRILVEFQP--FLCRFSL*YECGNQCIC 183
H+ TC+Q + L+ + +CR L YECG C C
Sbjct: 468 HQNCTCVQRNGDLLPYHNNILVCRKPLIYECGGSCPC 504
>At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116
Length = 128
Score = 30.3 bits (65), Expect = 0.69
Identities = 11/61 (18%), Positives = 33/61 (54%)
Frame = +2
Query: 191 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 370
+ ++ +++++ ++++G L+ FD F N +L++ E + L ++ G N+ +
Sbjct: 19 LDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGENVVL 78
Query: 371 L 373
+
Sbjct: 79 I 79
>At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Frame = +2
Query: 197 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRK 322
+++ I +N+++++G ++ FD NM+L++V TE T +G+K
Sbjct: 34 TQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 79
>At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Frame = +2
Query: 197 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRK 322
+++ I +N+++++G ++ FD NM+L++V TE T +G+K
Sbjct: 34 TQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 79
>At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Frame = +2
Query: 197 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRK 322
+++ I +N+++++G ++ FD NM+L++V TE T +G+K
Sbjct: 34 TQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 79
>At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 109
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Frame = +2
Query: 197 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRK 322
+++ I +N+++++G ++ FD NM+L++V TE T +G+K
Sbjct: 35 TQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 80
>At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D,
putative / snRNP core SM-like protein, putative / U6
snRNA-associated Sm-like protein, putative similar to
SWISS-PROT:Q9Y333 U6 snRNA-associated Sm-like protein
LSm2 (Small nuclear ribonuclear protein D homolog, G7b,
SnRNP core SM-like protein SM-x5) [Homo sapiens]
Length = 93
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 191 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD 286
+G + + +KND + GTL D ++N+ L++
Sbjct: 11 VGQEVTVELKNDLAIRGTLHSVDQYLNIKLEN 42
>At5g63930.1 68418.m08028 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1102
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 236 VGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLVP 379
+G+L G +N+ + +T E PE + L+ +LLN NN++ +P
Sbjct: 621 LGSLTGLQIALNLSYNKLTG-EIPPELSNLVMLEFLLLNNNNLSGEIP 667
>At1g07110.1 68414.m00756 fructose-6-phosphate 2-kinase /
fructose-2,6-bisphosphatase (F2KP) identical to
fructose-6-phosphate
2-kinase/fructose-2,6-bisphosphatase (F2KP) [Arabidopsis
thaliana] GI:13096098
Length = 744
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 251 GFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLVPGGEMPG 397
G DF + L + YE EG I +D + NG I + G +PG
Sbjct: 489 GVRDFRDRLANYEKVYEPVEEGSYIKMIDMVSGNGGQIQVNNISGYLPG 537
>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
protein contains similarity to 67kD chloroplastic
RNA-binding protein, P67.1 [Raphanus sativus]
GI:9755886; contains Pfam profile PF01535: PPR repeat
Length = 711
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 263 FVNMLLDDVTEYESTPEGRKI 325
FVN+++D+ TEYE+ E K+
Sbjct: 538 FVNLIVDEKTEYETVKEEFKL 558
>At4g27240.1 68417.m03911 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 431
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 179 VDKCIGSRIHIIMKNDKEMVGTLQGFD 259
V + I R+H ++N +EM G L GFD
Sbjct: 372 VCRVIAGRVHRPVENVEEMGGLLSGFD 398
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,853,829
Number of Sequences: 28952
Number of extensions: 192472
Number of successful extensions: 483
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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