Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11l22
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 30 1.2
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 29 2.1
05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960 29 2.1
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611... 29 3.6
03_05_1142 - 30703333-30703469,30704058-30704205,30704893-307049... 28 4.8
07_03_1654 - 28416487-28416548,28416791-28416824,28418156-284182... 28 6.3
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178... 27 8.3
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185... 27 8.3
03_03_0132 + 14711645-14711839,14712641-14712970,14713689-147137... 27 8.3
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 178 KGPEFTTDQGSSRALDSTIVPGSSRVRGSLRALGSS 285
+G T GSSR + + PGSS +G +R G+S
Sbjct: 107 RGRSLTNGAGSSRGMRGFVPPGSSSGQGGVRGHGAS 142
>11_06_0388 +
23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = +3
Query: 165 PEYIEGPRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEASRIINQ 344
P + ++ P + + P +S ++I P +S ++I P ++ +II++
Sbjct: 334 PIETQSEKIISEPIDTQSEKIISEPIETQSEKIISEPIDAQSEKIISEPIEAQSEKIISE 393
Query: 345 PVITET 362
P+ T+T
Sbjct: 394 PIDTQT 399
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/66 (19%), Positives = 32/66 (48%)
Frame = +3
Query: 165 PEYIEGPRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEASRIINQ 344
P + ++ P + + P +S ++I P ++ ++I P ++ +II++
Sbjct: 382 PIEAQSEKIISEPIDTQTEKIISDPIEAQSEKIISEPIDAQTEKIISEPIEAQSEKIISE 441
Query: 345 PVITET 362
P+ T+T
Sbjct: 442 PIDTQT 447
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/66 (19%), Positives = 32/66 (48%)
Frame = +3
Query: 165 PEYIEGPRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEASRIINQ 344
P + ++ P + + P +S ++I P ++ ++I P ++ +II++
Sbjct: 406 PIEAQSEKIISEPIDAQTEKIISEPIEAQSEKIISEPIDTQTEKIISDPIDTQSEKIISE 465
Query: 345 PVITET 362
P+ T+T
Sbjct: 466 PIDTQT 471
>05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960
Length = 127
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 455 LDCVGQVLADGRSAVRNYRGRWNPWSDTVAWCLGYHRLVDDP 330
LD VG V ADG + + +W+P D A L+ DP
Sbjct: 50 LDLVGYVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 91
>02_02_0015 +
6109552-6109650,6110006-6110078,6111937-6111998,
6112315-6112376,6112463-6112556,6112673-6113227,
6113379-6113870,6113967-6114137,6115713-6115817,
6115903-6116052,6116372-6116498,6116585-6116648,
6117147-6117203,6117423-6117555,6117660-6117746
Length = 776
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 296 SRALDEPRALNEPRTLDEPGTIVESRALEDP 204
+R +D PR ++ PR +D P I R ++ P
Sbjct: 270 ARTIDPPRPIDPPRPIDPPRPIDPPRPIDPP 300
>03_05_1142 -
30703333-30703469,30704058-30704205,30704893-30704963,
30705189-30705285,30705371-30705562,30705639-30705977
Length = 327
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -2
Query: 221 RALEDPWSVVNSGPFDV---FRHLSWSYAVGLLPEILRFCCL-IKYSHRNQQQNKL 66
RAL+D V P +V +R + A+GLLPE FC I+ N++ KL
Sbjct: 96 RALDDAARAVQLSPSNVKAYYRAAKAAIALGLLPEAAAFCRRGIEQDPANEELKKL 151
>07_03_1654 -
28416487-28416548,28416791-28416824,28418156-28418212,
28418401-28418450,28418968-28419025,28419136-28419182,
28419278-28419377,28419446-28419586,28419715-28419780,
28420024-28420118,28420440-28420629
Length = 299
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 153 PRQMPEYIEGPRVYDGPRIFEGPRFYDSPRLIESP 257
P Q+ Y RVYD R + PR SPRL SP
Sbjct: 3 PNQLRPYEYTTRVYD-VRHDQTPRLVSSPRLASSP 36
>12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,
1787103-1787261,1787432-1787603,1787705-1788003,
1788278-1788583
Length = 1039
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 466 MIINWIVLAKFLQTVGVQSVIIVADGTLGATL 371
+I NWI +A TV Q VII GT +T+
Sbjct: 957 IISNWIFIAVIAATVAFQVVIIEFLGTFASTV 988
>11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,
1856342-1856500,1856692-1856863,1856965-1857263,
1857539-1857844
Length = 1017
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 466 MIINWIVLAKFLQTVGVQSVIIVADGTLGATL 371
+I NWI +A TV Q VII GT +T+
Sbjct: 935 IISNWIFIAVIAATVAFQVVIIEFLGTFASTV 966
>03_03_0132 +
14711645-14711839,14712641-14712970,14713689-14713751,
14713833-14713906,14714004-14714099,14714705-14714759,
14714867-14714971,14715054-14715135,14715450-14715562,
14715717-14716118
Length = 504
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 90 MTIFDKTAKSQYLRQQPYSITPRQMPEYIEGPRVYDG 200
+ IF+K +Q L Q P T E +EG +YDG
Sbjct: 317 IAIFEKNGGTQALIQYPDVTTASVAKEALEGHCIYDG 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,213
Number of Sequences: 37544
Number of extensions: 327640
Number of successful extensions: 973
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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