Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l20
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0115 - 11248021-11248101,11249017-11249118                       84   4e-17
05_03_0661 - 16726958-16726966,16727133-16727234                       57   7e-09
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597...    30   0.74 
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061     28   3.0  
06_03_0336 + 19671500-19672150,19672681-19673301                       27   5.2  
08_02_0588 + 19036509-19039235                                         27   9.1  
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696...    27   9.1  
02_05_0773 + 31654985-31655365,31655486-31655610,31655712-316560...    27   9.1  

>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 84.2 bits (199), Expect = 4e-17
 Identities = 37/52 (71%), Positives = 43/52 (82%)
 Frame = +1

Query: 181 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 336
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST GMDPKFLRNQR+ +K N K
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKK 52


>05_03_0661 - 16726958-16726966,16727133-16727234
          Length = 36

 Score = 56.8 bits (131), Expect = 7e-09
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = +1

Query: 181 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 288
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST G +
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGFE 36


>08_01_0682 +
           5974622-5974745,5976182-5976371,5976953-5977024,
           5977482-5977553,5977688-5977759,5977842-5977913,
           5978690-5978761,5978855-5978926,5979017-5979091,
           5979529-5979594,5979821-5979885,5979975-5980354,
           5980438-5980636,5980713-5980763,5980955-5981073,
           5981190-5981400,5981524-5981755,5981842-5981992,
           5982089-5982447,5982750-5982768
          Length = 890

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 119 RCVGIYSNDFIFLYRIENSSKWQSQRIIQIITKTAKL-TEMVSKSQGRPGTNPPLAW 286
           RC G +    + LY +  +  W +    Q   +T  +    ++   GR GTNPP  W
Sbjct: 4   RCSGSHGRQLLLLYWLVIACSWVAAAQAQQAPRTDPVEVAALNAILGRWGTNPPKTW 60


>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
          Length = 691

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 244 KKPRKTRHESTLGMDPKFLRNQ-RFCKKG 327
           +KP K R    L +  +F+R+Q + CKKG
Sbjct: 454 RKPTKPRQRGKLKLQSQFIRDQNKICKKG 482


>06_03_0336 + 19671500-19672150,19672681-19673301
          Length = 423

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 279 WHGSKIFKESKVLQEG*PEASQATREGG 362
           WH    FK S+    G PEA+ A  EGG
Sbjct: 223 WHEINQFKSSEKSLVGMPEAAAAEEEGG 250


>08_02_0588 + 19036509-19039235
          Length = 908

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 351 ELLGWLQVTLLAKPLIP*KFWIHAKGGFVPG 259
           ELLGW QV   A  ++P +  + A   F PG
Sbjct: 423 ELLGWKQVLAQAANVLPKRRMVSATRRFPPG 453


>03_02_0952 +
           12666750-12666777,12666965-12667185,12669464-12669649,
           12670147-12670212,12670335-12670427,12670528-12670659,
           12670794-12670895,12670993-12671070,12671148-12671219,
           12672185-12672292,12672368-12672465,12672904-12672964,
           12673058-12673120,12673228-12673284,12673571-12673729,
           12674310-12674441,12674516-12674602,12674667-12674738,
           12675899-12675985,12676052-12676427,12676727-12676788,
           12676946-12677014,12677096-12677142,12677189-12677342,
           12677874-12677999
          Length = 911

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 131 IYSNDFIFLYRIENSSKWQSQRIIQIITKTAKLTEMVSKSQG 256
           +   D +   RIEN      +RI++  TK +KL ++  K++G
Sbjct: 214 VEDTDMVTFERIENEFGVTVRRIVEGETKVSKLGKLQCKNEG 255


>02_05_0773 +
           31654985-31655365,31655486-31655610,31655712-31656026,
           31656145-31656314,31656408-31656751
          Length = 444

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 220 RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFC 318
           ++AHRNG+K    T H++  G+ P+ + + + C
Sbjct: 121 QRAHRNGVKVLALTDHDTMAGV-PEAIESAKQC 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,508,733
Number of Sequences: 37544
Number of extensions: 166936
Number of successful extensions: 447
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)