Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11l20
(446 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 29 1.8
SB_40598| Best HMM Match : Stap_Strp_toxin (HMM E-Value=2.7) 29 1.8
SB_45462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_1847| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_25197| Best HMM Match : TatC (HMM E-Value=1.8) 28 4.0
SB_3594| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_33977| Best HMM Match : CUE (HMM E-Value=0.52) 27 5.3
SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_31788| Best HMM Match : Kazal_1 (HMM E-Value=0) 27 9.3
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 30.7 bits (66), Expect = 0.57
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 223 KAHRNGIKKPRKTRHESTLGM 285
K HRNGIKKPR R+ S G+
Sbjct: 175 KWHRNGIKKPRTNRYPSLKGV 195
>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 175 IKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQR 312
IK N HNQ + + KK RK RH DP+ L+ ++
Sbjct: 123 IKQTSDNNKPQHNQKNTSKK---KKKRKDRHRKKQDQDPEPLKEKK 165
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 178 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 276
K AKSK NH ++ K R KK ++T +ST
Sbjct: 145 KNAKSKIKRNHGEDNKPKRISTKKRKRTDKDST 177
>SB_40598| Best HMM Match : Stap_Strp_toxin (HMM E-Value=2.7)
Length = 192
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 184 AKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 288
+K+ N TN NQ K P+KT ++T+ D
Sbjct: 153 SKNNNQTNRNQGNTGITENTKSPKKTNIDATVPSD 187
>SB_45462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +2
Query: 8 FYPLIQS-GSCFSKHVKNSLNINKII*QNKYFK 103
++PLI+S SCF K ++N++N + + KY++
Sbjct: 113 YFPLIKSLTSCFPKKIRNTVNRERKACRAKYYE 145
>SB_1847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 27.9 bits (59), Expect = 4.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 248 SQGRPGTNPPLAWIQN 295
S GRPG N P+AW+ +
Sbjct: 31 SPGRPGPNAPIAWVND 46
>SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)
Length = 622
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 172 LIKMAKSKNHTNHNQNRKAH-RNGIKKPRKTRHESTL 279
LI KSK+H NHN+ + H + I K H+ T+
Sbjct: 571 LIVYCKSKHHANHNKGCERHFEDDINKCGCRNHDHTI 607
>SB_3594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 172 LIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLR 303
+I + + H +HN +R + N IK + RH T F R
Sbjct: 114 VIGVVRHVRHDDHNLSRSHNNNAIKSRNQNRHFVTQSQQHVFTR 157
>SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)
Length = 1183
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = +2
Query: 167 ENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNP 274
E +W +R++ + + KL E + ++GR P
Sbjct: 1031 EKYREWHMKRVLPLFVQDTKLREKIENAEGRTSGGP 1066
>SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 451
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 181 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 270
+ S +HN + R GIK+PR+++ E
Sbjct: 342 LTTSPTMISHNNQQNDSRRGIKRPRRSQEE 371
>SB_31788| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 352
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 169 KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 276
K IK AK N+N RK G K+P++ R ++T
Sbjct: 86 KPIKKAKVSK-VNNNGRRKEKNRGQKRPKRCRPDTT 120
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 350 SRGRLREKLPEKQRPRNE 403
SRGR EK PEKQR +++
Sbjct: 267 SRGRSAEKSPEKQRDKSD 284
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,402,177
Number of Sequences: 59808
Number of extensions: 199165
Number of successful extensions: 569
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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