Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l20
         (446 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi...    89   1e-18
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi...    89   2e-18
At1g04030.1 68414.m00390 expressed protein                             33   0.12 
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A...    32   0.20 
At3g48200.1 68416.m05259 expressed protein                             29   1.9  
At4g37950.1 68417.m05365 expressed protein                             27   4.4  
At5g56560.1 68418.m07058 F-box family protein contains F-box dom...    27   7.6  

>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
           to 60S ribosomal protein L29 GB:P25886 from (Rattus
           norvegicus)
          Length = 83

 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 38/53 (71%), Positives = 45/53 (84%)
 Frame = +1

Query: 178 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 336
           +MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T GMDPKFLRNQR+ +K N+K
Sbjct: 22  EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 74


>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
           to ribosomal protein L29 GI:7959366 [Panax ginseng]
          Length = 61

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 38/52 (73%), Positives = 44/52 (84%)
 Frame = +1

Query: 181 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 336
           MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T GMDPKFLRNQR+ +K N+K
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 52


>At1g04030.1 68414.m00390 expressed protein
          Length = 418

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 154 PLQD*KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPK 294
           P+++    K AKSK  T   Q++K + N I    + R  S+ G DP+
Sbjct: 207 PVENLTQWKSAKSKGRTKQKQSQKENSNFIADQEEKRDSSSFGTDPQ 253


>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845
          Length = 400

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 193 KNHTNHNQNRKAHRNGIKKPRKTRHESTLG 282
           KNHT H++ R ++  G K  RKT   +T G
Sbjct: 88  KNHTFHHKMRMSYSEGSKMKRKTHRNTTFG 117


>At3g48200.1 68416.m05259 expressed protein
          Length = 1088

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +1

Query: 115 YTLCRYLQ*RL-YFPLQ-D*KL---IKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTL 279
           Y L R +Q  + YFPL  + K+   I +A S     H+   K H N I     T  ES  
Sbjct: 523 YELVRGIQWIIPYFPLPWETKIKEQIMVATSPYIGPHSFISKTHNNMINLKTSTNAESVF 582

Query: 280 GMDPKFLRNQRFCKKGNLKP 339
           G+    +  + F +  NLKP
Sbjct: 583 GLPLTAMEYRLFFETSNLKP 602


>At4g37950.1 68417.m05365 expressed protein 
          Length = 678

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
 Frame = +2

Query: 38  FSKHVKNSLNINKII*QNKYFKIE*AIRCVGIYSNDFIF--LYRIENSSKWQSQ-RIIQI 208
           F K V   L+  +   + + F I+  I+ V      F F  L     +  WQ++ +  Q 
Sbjct: 361 FVKSVDYPLHHQRGTVKGQLFVIDRYIKNVTYLFGQFAFVGLALPGEAGSWQTENKGYQF 420

Query: 209 ITKTAKLTEMVSKSQGRPGTNPPLAWIQNF*GIKGFARRVT 331
            T+  K+  M + +  RPGT    AW+  F G   + R +T
Sbjct: 421 WTRADKMG-MFTIANVRPGTYSLYAWVSGFIGDYKYVRDIT 460


>At5g56560.1 68418.m07058 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 607

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 328 YPSCKTFDSLKILDPCQGWIRAWSSL 251
           YP+C  F SLK L+ C    R W++L
Sbjct: 475 YPACTVFSSLKYLELCTCSAR-WANL 499


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,013,192
Number of Sequences: 28952
Number of extensions: 143808
Number of successful extensions: 396
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)