Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l18
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    28   0.94 
SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr...    28   1.2  
SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual       27   1.6  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   2.2  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   2.9  
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    25   6.6  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   6.6  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   8.8  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    25   8.8  

>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 387  GKTVKILFKVVAERVTPVLRLNSCEKLGLVARVETLKESSTNDDIFKRV 241
            G T K+  ++     + V+R NS  +L LVA +  +     ND+ FK++
Sbjct: 1088 GSTSKVFSRIPYSASSTVIRNNSSHELSLVAFIREMAMPVPNDE-FKKI 1135


>SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 323

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 7/25 (28%), Positives = 19/25 (76%)
 Frame = -1

Query: 231 KKFEYDIDLIENPKFEIKPIRNVPH 157
           ++  Y +++++NPKF+ +P++  P+
Sbjct: 57  ERLGYSVNVVQNPKFKSRPLKEGPN 81


>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 219 YDIDLIENPKFEIKPIRNVPH 157
           YD+ LI+NP+F+ +P +  P+
Sbjct: 61  YDVKLIQNPEFKSRPSKEGPN 81


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 143 SFLMACGTFLIGLISNLGFSMRSISYSNFLYQRTLL 250
           S L ACG F    IS+LGF  R  SY  F ++  +L
Sbjct: 664 SQLRACGVFETIRISSLGFPAR-FSYEEFAHRFRIL 698


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 23/64 (35%), Positives = 32/64 (50%)
 Frame = +2

Query: 104  TSSFTILSNSCFTSFLMACGTFLIGLISNLGFSMRSISYSNFLYQRTLLNMSSLVELSFN 283
            TSS    +N  FT+ +    TF    +SN GFS +  +Y N + QR  +NM S    S +
Sbjct: 1302 TSSDIPKANIDFTNDISTQNTFPASPVSNSGFSRQ--TYPN-ISQRQGVNMLSHKRKSAS 1358

Query: 284  VSTR 295
             S R
Sbjct: 1359 TSDR 1362


>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = -1

Query: 282 LKESSTNDDIFKRVRWYKKFEYDIDLIENPKFEIKPIRNVPHAIRNEVKQELDRM 118
           LKE  T D        + + + D+  I   + EI  +RN    + +++K+ L+++
Sbjct: 26  LKERVTMDTPLLTEDGFPRSDIDVPSIRTARHEIITLRNDHRELEDQIKKVLEKV 80


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -1

Query: 204 IENPKFEIKPIRNVPHAIRNEVKQELDRMVKLDVIKPETEPTTAVS 67
           + + + EI+P  +VP A  NE+ ++   +  ++ I    E    +S
Sbjct: 530 VSSTQQEIQPSSSVPEAASNEIAEKEPAVTAIESITERKEEAPVIS 575


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -1

Query: 180 KPIRNVPHAIRNEVKQEL-DRMVKLDVIKPETE-PTTAVSPMVVIRQK 43
           K +   P+A+  +++  L DR    + +    E PT A+ P+V++ QK
Sbjct: 571 KCLHEAPYAMVTDIRMNLFDRKNITEFLDSTLESPTQALGPLVLLMQK 618


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 130 FLFYFISYGVWNISYRFNFKFRVFYEVN 213
           ++ +++S  VWN    F F +RVFY ++
Sbjct: 36  YMAFYVSLLVWN----FYFGYRVFYRIS 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,882
Number of Sequences: 5004
Number of extensions: 47199
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)