Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l18
         (618 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran...    35   0.10 
AE013599-1344|AAF58622.1|  388|Drosophila melanogaster CG12444-P...    33   0.31 
AE013599-1343|AAM68696.1|  561|Drosophila melanogaster CG12444-P...    33   0.31 
AE014297-112|ABI31134.1|  823|Drosophila melanogaster CG41467-PA...    29   6.6  

>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 1088

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 25/95 (26%), Positives = 49/95 (51%)
 Frame = -1

Query: 327 LNSCEKLGLVARVETLKESSTNDDIFKRVRWYKKFEYDIDLIENPKFEIKPIRNVPHAIR 148
           L+S EK  L++  ++  +   N+D  K + +  K  + I   ++     K  R  P+  +
Sbjct: 159 LSSEEKQSLLSLCKSYLDIFYNED--KSLTFTNKITHTIKTTDDTPIHTKSYR-YPYIHK 215

Query: 147 NEVKQELDRMVKLDVIKPETEPTTAVSPMVVIRQK 43
            EVK++++ M+  D+IK    P +A  P+ V+ +K
Sbjct: 216 EEVKKQIEAMLNQDIIKSSYSPWSA--PVWVVPKK 248


>AE013599-1344|AAF58622.1|  388|Drosophila melanogaster CG12444-PA,
           isoform A protein.
          Length = 388

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +2

Query: 86  SVSGLMTSSFTILSNSCFTSFLMACGTFLIGLI-SNLGFSMRSISYSNFLYQRTLLNMSS 262
           +V  L+    ++  +S  + F++    F IG I SNL  ++ S+  +  LYQR + N++ 
Sbjct: 157 AVQTLLNRELSLPQSSSGSKFMLLLLLFAIGFILSNLYVALLSMMLTTKLYQRPIENLAD 216

Query: 263 LVELSFNVSTRATN 304
           L   + N+  +  N
Sbjct: 217 LKAANVNILLQTHN 230


>AE013599-1343|AAM68696.1|  561|Drosophila melanogaster CG12444-PB,
           isoform B protein.
          Length = 561

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +2

Query: 86  SVSGLMTSSFTILSNSCFTSFLMACGTFLIGLI-SNLGFSMRSISYSNFLYQRTLLNMSS 262
           +V  L+    ++  +S  + F++    F IG I SNL  ++ S+  +  LYQR + N++ 
Sbjct: 330 AVQTLLNRELSLPQSSSGSKFMLLLLLFAIGFILSNLYVALLSMMLTTKLYQRPIENLAD 389

Query: 263 LVELSFNVSTRATN 304
           L   + N+  +  N
Sbjct: 390 LKAANVNILLQTHN 403


>AE014297-112|ABI31134.1|  823|Drosophila melanogaster CG41467-PA,
           isoform A protein.
          Length = 823

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
 Frame = -1

Query: 363 KVVAERVTPVLRLNSCEKLGLVARVETLKESS--TNDDIFKRV--RWYKKFEYDIDLIEN 196
           K++ ER+  + +L+ C K+ +  RV   +E++   ++ + K++   + +K   D +L EN
Sbjct: 300 KMMDERIADLYQLDMCTKVNITERVRVKREAAEKCHEILRKQICEDYERKIRSDAELREN 359

Query: 195 PKFEIKPIR-NVPH---AIRN-EVKQELDRMVK 112
              E + +   V H   A R  + K +LD  +K
Sbjct: 360 KMMENRFVHPEVTHEMIACRQIQHKADLDAQIK 392


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,764,036
Number of Sequences: 53049
Number of extensions: 463666
Number of successful extensions: 1302
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)