Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l18
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    27   0.15 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.45 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   9.6  

>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 293 RATNPNFSQLFSLKTGVTLSATTLNSILTVFPFILYCNFTSPS 421
           RA NP +   F +  G T SAT  N++ T+F   ++ N  S S
Sbjct: 58  RAINPEYG-FFGVAPG-TSSATNPNAMKTIFKNTIFTNVASTS 98


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = -1

Query: 219 YDIDLIENPKFEIKPIRNVPHAIRNEVKQELDRMVKLDV 103
           YD DL+ N    ++P+ NV  A+  ++K +L +++ +++
Sbjct: 29  YD-DLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNL 66


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -1

Query: 219 YDIDLIENPKFEIKPIRNVPHAIRNEVKQELDRMVKLDV 103
           YD DL+ N    ++P+ N    +R  +K +L +++ +++
Sbjct: 33  YD-DLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNL 70


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -1

Query: 219 YDIDLIENPKFEIKPIRNVPHAIRNEVKQELDRMVKLDV 103
           YD DL+ N    ++P+ N    +R  +K +L +++ +++
Sbjct: 33  YD-DLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNL 70


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 513 GRTLHSAPLLSFAVNLVLPVWTLSANLWSCQ 605
           G  L + P+    +N  L   +L +N WSC+
Sbjct: 899 GNRLVTFPVWQVTLNARLVELSLGSNPWSCR 929


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 270 STNDDIFKRVRWYKKFEYDIDLIEN 196
           S  +DI K + W +K    ID++ N
Sbjct: 66  SNQNDILKVIEWVEKNLGAIDILIN 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,873
Number of Sequences: 438
Number of extensions: 3554
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)