Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11l17
(632 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A) 96 2e-20
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo... 95 5e-20
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila... 30 1.1
At5g02840.2 68418.m00227 myb family transcription factor contain... 29 1.9
At5g02840.1 68418.m00226 myb family transcription factor contain... 29 1.9
At1g01520.1 68414.m00068 myb family transcription factor similar... 29 1.9
At5g15890.1 68418.m01859 expressed protein 29 3.4
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 28 4.5
At1g09770.1 68414.m01096 myb family transcription factor contain... 28 4.5
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 28 5.9
At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT... 27 7.8
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 27 7.8
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 27 7.8
At1g02290.1 68414.m00171 expressed protein 27 7.8
>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
Length = 134
Score = 95.9 bits (228), Expect = 2e-20
Identities = 51/119 (42%), Positives = 73/119 (61%)
Frame = +2
Query: 47 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 226
M F R+VE GRVALV G GKLV +VDV+DQ RALVD P + R Q+ L +L LT
Sbjct: 1 MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAP--DMERIQMNLKRLSLTDI 58
Query: 227 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 403
+ +++ +A A + KW +S W +KL +++RA + D+DRFK+ A++KR
Sbjct: 59 VIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKR 117
>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
ribosomal protein L14 - Human,PIR3:JC5954
Length = 134
Score = 94.7 bits (225), Expect = 5e-20
Identities = 50/119 (42%), Positives = 71/119 (59%)
Frame = +2
Query: 47 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 226
M F RYVE GRVALV G GKLV +VDV+DQ RALVD P + R Q+ +L LT
Sbjct: 1 MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAP--DMERIQMNFKRLSLTDI 58
Query: 227 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 403
+ + + +A A + KW +S W +KL +++RA + D+DRFK+ A++K+
Sbjct: 59 VIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKK 117
>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar to
nodule inception protein [Lotus japonicus] GI:6448579;
contains Pfam profile: PF02042 RWP-RK domain
Length = 841
Score = 30.3 bits (65), Expect = 1.1
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
Frame = +2
Query: 50 PFARYVEPGRVALVADGP--LKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTK 223
P+ + P + L + P L ++ DV + R D GS R ++N + T+
Sbjct: 634 PWPHQIPPIDIQLAKNCPPTSTSPLSNLQDVKIENRDAEDSAGSSTSRASCKVNPICETR 693
Query: 224 FRLKYAFTAPTRLVRKAWTDAKLNEKWTESQWA----QKLANKE---------KRAQMTD 364
FRL P+R V A D+ + K + WA Q A+ K D
Sbjct: 694 FRLPTHNQEPSRQV--ALDDSDSSSKNMTNFWAHLTCQDTASPTILQHKLVSIKATYRED 751
Query: 365 YDRFKLTAARVKRNRARTAVFKSLKVKAA 451
RFK++ V + V K LK++ A
Sbjct: 752 IIRFKISPESVSITELKQQVAKRLKLETA 780
>At5g02840.2 68418.m00227 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 248 APTRLVRKAWTDAKLNEKWTESQ 316
AP + VRKA+T K E WTE +
Sbjct: 33 APEKKVRKAYTITKSRESWTEGE 55
>At5g02840.1 68418.m00226 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 248 APTRLVRKAWTDAKLNEKWTESQ 316
AP + VRKA+T K E WTE +
Sbjct: 33 APEKKVRKAYTITKSRESWTEGE 55
>At1g01520.1 68414.m00068 myb family transcription factor similar to
myb-related protein GI:2505876 from [Arabidopsis
thaliana]
Length = 287
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 242 FTAPTRLVRKAWTDAKLNEKWTESQ 316
F PT+ VRK +T K E WTE +
Sbjct: 44 FEDPTKKVRKPYTITKSRENWTEQE 68
>At5g15890.1 68418.m01859 expressed protein
Length = 526
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 171 PGPSTSARVWSITSTTLTNFPFKGPSATRATRP 73
P P T +VW+ TS T P +AT+P
Sbjct: 286 PSPDTDFKVWNYTSYNFTLHVMWSPFLVKATKP 318
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 65 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 217
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g09770.1 68414.m01096 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 844
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/81 (23%), Positives = 37/81 (45%)
Frame = +2
Query: 239 AFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRART 418
AF VRK + + + ++++ E+RA+ T + + + T + +
Sbjct: 692 AFQEEMENVRKKMEEDEKKAEHMKAKYKTYTKGHERRAE-TVWTQIEATLKQAEIGGTEV 750
Query: 419 AVFKSLKVKAARAGTFGKKNI 481
FK+LK + A +F KKN+
Sbjct: 751 ECFKALKRQEEMAASFRKKNL 771
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +2
Query: 197 RLNQLHLTKFRLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRF 376
R + +H K RL+ A PT + D L + S + +E A + DY RF
Sbjct: 64 RSDNVHTVKRRLQIALNFPTEESSLTYGDMVLTNDLSSSVRVGETGFREVAAYLLDYGRF 123
>At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT3)
identical to homeobox protein knotted-1 like 3 (KNAT3)
SP:P48000 from [Arabidopsis thaliana]
Length = 431
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 135 TSTTLTNFPFKGPSATRATRPGSTYRAKGMTFLQRLNTNN 16
T+ T T PS+ A + + ++ +FLQR N NN
Sbjct: 69 TANTTTASSSDSPSSAAAAAAANQWLSRSSSFLQRNNNNN 108
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 65 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 217
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 65 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 217
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g02290.1 68414.m00171 expressed protein
Length = 443
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 166 TRQWST*ATDPLKPTPSHKIPPQIRVHSPYSSCEESV 276
T Q S T+P+ P+H +P +RV S YS E+++
Sbjct: 326 TTQRSIQGTEPVFHDPTHTVPSALRV-SNYSITEQNI 361
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,679,706
Number of Sequences: 28952
Number of extensions: 258913
Number of successful extensions: 756
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -