Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l16
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)           184   3e-47
At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi...   184   4e-47
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo...   183   6e-47
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ...    36   0.019
At4g25220.1 68417.m03629 transporter, putative similar to glycer...    28   3.8  
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    28   5.0  
At3g56410.2 68416.m06274 expressed protein                             28   5.0  
At3g56410.1 68416.m06273 expressed protein                             28   5.0  
At5g12370.1 68418.m01455 exocyst complex component Sec10-related...    27   8.7  

>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
          Length = 150

 Score =  184 bits (449), Expect = 3e-47
 Identities = 92/140 (65%), Positives = 104/140 (74%)
 Frame = +3

Query: 63  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 242
           M+ RK K  K +V VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 243 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 422
           KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA            AQ       
Sbjct: 60  KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALA 119

Query: 423 XXXMKIGRIEDVTPVPSDST 482
              MKIGRIEDVTP+P+DST
Sbjct: 120 RSGMKIGRIEDVTPIPTDST 139


>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
           to 40S ribosomal protein S14 GB:P19950 [Zea mays]
          Length = 150

 Score =  184 bits (448), Expect = 4e-47
 Identities = 92/140 (65%), Positives = 103/140 (73%)
 Frame = +3

Query: 63  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 242
           M+ RK K  K E  VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVET-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 243 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 422
           KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA            AQ       
Sbjct: 60  KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALA 119

Query: 423 XXXMKIGRIEDVTPVPSDST 482
              MKIGRIEDVTP+P+DST
Sbjct: 120 RSGMKIGRIEDVTPIPTDST 139


>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
           ribosomal protein S14 -Zea mays,PIR2:A30097
          Length = 150

 Score =  183 bits (446), Expect = 6e-47
 Identities = 91/140 (65%), Positives = 103/140 (73%)
 Frame = +3

Query: 63  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 242
           M+ RK K  K E  VTLGP    GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVE-NVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 243 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 422
           KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA            AQ       
Sbjct: 60  KVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALA 119

Query: 423 XXXMKIGRIEDVTPVPSDST 482
              MKIGRIEDVTP+P+DST
Sbjct: 120 RSGMKIGRIEDVTPIPTDST 139


>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
           putative contains Pfam profile: PF00411: Ribosomal
           protein S11
          Length = 314

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = +3

Query: 135 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 314
           ET   + HI    N+TFV VTD  G       +G +       + + Y A   A+++  +
Sbjct: 190 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 249

Query: 315 CKTLGITALHIKL 353
            K +G+ ++ +K+
Sbjct: 250 AKAMGLKSVVVKV 262


>At4g25220.1 68417.m03629 transporter, putative similar to
           glycerol-3-phosphate transporter (glycerol 3-phosphate
           permease) [Homo sapiens] GI:7543982
          Length = 504

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 517 YSLRPLRPPFLRVESDGTGVTSSMR 443
           Y   P+ PP +  E DGT + S+MR
Sbjct: 225 YLFLPVNPPTVEAERDGTEIDSTMR 249


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 84  LCFFSGPWLSL*LESCQNLKEIWL 13
           LC +   WL   LESC NLK + L
Sbjct: 807 LCIYDLKWLPTFLESCPNLKSLIL 830


>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 284  YVGGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDW 442
            Y  G+ C  E +NSW   +   A     + N +P+ W S   +     +YE W
Sbjct: 1040 YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1090


>At3g56410.1 68416.m06273 expressed protein
          Length = 1488

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 284  YVGGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDW 442
            Y  G+ C  E +NSW   +   A     + N +P+ W S   +     +YE W
Sbjct: 993  YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1043


>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
           low similarity to SP|O00471 Exocyst complex component
           Sec10 (hSec10) {Homo sapiens}
          Length = 858

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 231 TGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 338
           +GG+++K D +E   +     A  V EK + LGI A
Sbjct: 777 SGGLRLKRDLNEYVGFVKSFGAPSVDEKFELLGIIA 812


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,251,047
Number of Sequences: 28952
Number of extensions: 258347
Number of successful extensions: 621
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)