Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l15
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0147 + 12763526-12763815,12763938-12764067,12764185-127644...    30   1.3  
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410...    28   5.4  
04_03_0094 - 11113279-11114469                                         27   9.5  

>09_03_0147 +
           12763526-12763815,12763938-12764067,12764185-12764435,
           12764546-12764750,12764878-12764918,12765006-12765131,
           12765429-12765502,12765671-12765891,12766251-12766345,
           12766463-12766679,12766781-12766906,12766988-12767086,
           12767171-12767380,12767496-12767606
          Length = 731

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 183 GHHIVFVASVLWMQGPQMTLQPLENECGILLYNGDIFDESWDSRTSDTQIIM 338
           G  + +  ++ WM GP +    L N   + LYNG +    +     D ++ M
Sbjct: 401 GDVVAWPTNLGWMMGPWLVYASLLNGASMALYNGSLNSSGFAKFVQDAKVTM 452


>01_01_0558 +
           4098383-4098510,4100462-4100572,4100765-4100853,
           4100974-4101107,4101337-4101435,4102619-4102994,
           4103883-4104337,4104419-4107409
          Length = 1460

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 276 TKGCHIHFREVVMSFADLASIELRLRKLCGVQ 181
           T G  IH R + + F+D+A +   +RKLC +Q
Sbjct: 814 TIGDLIHLRYLDLRFSDIAELPESVRKLCHLQ 845


>04_03_0094 - 11113279-11114469
          Length = 396

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 71  FGVKLRKM*HSERY*CPSKTQKQRTRSLTEEGFY-F*NWTPHSFR 202
           F VKLR   HS R  CP  T  + +    EE  + F    PH FR
Sbjct: 116 FDVKLRYWDHSRRNLCPFGTHPKASADFDEEMRHSFTATPPHIFR 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,660,455
Number of Sequences: 37544
Number of extensions: 289876
Number of successful extensions: 701
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)