Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l15
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33537| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   7e-15
SB_22867| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_47389| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   7.4  
SB_17161| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_33537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 14/160 (8%)
 Frame = +3

Query: 57  MCGIFLELSCE---KCSIVNDI---DVLRRLKNRGPD---HLQRKDFIS--EIGHHIVFV 203
           MCGIF  L CE   +C I  +     V   LK RGPD      R  F    +  +H+   
Sbjct: 1   MCGIFCCL-CEDNDECKISAEKIKQSVTPLLKRRGPDCFGSASRNVFSRNPQKAYHLTLA 59

Query: 204 ASVLWMQGPQMTLQPLENECG-ILLYNGDIFDE-SWDSRTSDTQIIMEKLSYDCDSQ-ID 374
            SVL ++G  +T QP E E G +L++NG+IF      ++++DT ++ + L +  ++  + 
Sbjct: 60  GSVLHLRG-SLTRQPYETEGGNVLVWNGEIFGGVEIPNKSNDTSVLSQLLDFHGETDPVS 118

Query: 375 KVINVLKSLKGPFSLIYYCKVTNKLYFTRDRFGRNSLLIH 494
            V++V+  ++GP+S IY+     +L+F RD FGR SLL H
Sbjct: 119 HVVDVMSRIRGPWSFIYWQASQERLWFGRDFFGRRSLLWH 158


>SB_22867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 315 FCYPKIRQIYHHYTKGCHIHFREVV-MSFADLASIELRLRKLCG 187
           F Y KIRQ++H    GC +  RE++  S        L  R LCG
Sbjct: 21  FSYLKIRQLFHLANFGCLLEKRELITSSLMRSGDRYLAARCLCG 64


>SB_47389| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 341

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 268 MPHSFSRGCNVICGPCIHRT 209
           MP++     +VIC PC HRT
Sbjct: 277 MPYTLVSCASVICPPCFHRT 296


>SB_17161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 262 HSFSRGCNVICGPCIHRTEATKTMWCPISEIKSFL 158
           + F+R CN  CG C H  + +  +  PI E K  L
Sbjct: 519 YHFTRQCNYQCGFCFHTAKTSFVL--PIEEAKKGL 551


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,253,008
Number of Sequences: 59808
Number of extensions: 375377
Number of successful extensions: 864
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)