Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l13
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45562| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   2e-10
SB_15382| Best HMM Match : Exo_endo_phos (HMM E-Value=2.2e-06)         29   1.9  
SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_35867| Best HMM Match : Fibrinogen_C (HMM E-Value=6.5e-13)          27   7.9  

>SB_45562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 47/74 (63%)
 Frame = +2

Query: 299 LTSLEEGLCETETHQVILETVNLSRISFAKPPFVKKIKRVFKLLSDDHLEATLYMETDTT 478
           +T L EG  E E   +  + +   R+SF KPP V K +RV+ L+ ++ LE   +MET+TT
Sbjct: 2   VTELLEGEVEGEVLHLTAQAIG--RMSFGKPPAVLKTERVYMLVDENTLEFKQFMETETT 59

Query: 479 PMSEHLKAVYKKIQ 520
           P ++HL+A YK+ Q
Sbjct: 60  PRTQHLQATYKRAQ 73


>SB_15382| Best HMM Match : Exo_endo_phos (HMM E-Value=2.2e-06)
          Length = 493

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
 Frame = +2

Query: 116 NIPDFTYH-EDLE--FLCIGQPMYNFLSTSRHPEKQTPMHQERGFLRIKPGTNELSFVVS 286
           N+PD ++   D E  ++    P Y  L      +        +G        N L  V++
Sbjct: 296 NLPDISWDCTDCENKYIVKANPQYGVLVNQAFIDTIHEHSLSQGVTEPTRENNILDLVLT 355

Query: 287 HNFGLTSLEEGLCETETHQVILETVNLSRISFAKPP 394
            N  L S  E L     H V+L TVNL   +  K P
Sbjct: 356 TNPDLISRTEVLNGMSNHSVVLSTVNLKTRTPKKKP 391


>SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1115

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 116 NIPDFTYHEDLEFLCIGQPMYNFLSTSRHPEKQT 217
           N PD T H +    C+   +YN LS  + P   T
Sbjct: 359 NFPDLTKHNNWMAKCLTPAVYNMLSVLKTPTGYT 392


>SB_35867| Best HMM Match : Fibrinogen_C (HMM E-Value=6.5e-13)
          Length = 445

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 263 NELSFVVSHNFGLTSLEEGLCE 328
           ++L   VS+NFGL  +  G+CE
Sbjct: 106 DQLDDCVSYNFGLDGMNRGICE 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,179,263
Number of Sequences: 59808
Number of extensions: 360753
Number of successful extensions: 969
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)