Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l13
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   4.8  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.4  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 169 LSNAEKLQVFMICKVWYVRIISSAISCGPTAFQPGNGRQSFMNLR 35
           L  A++L++  +C+V   R    ++S      +PG  R +F  L+
Sbjct: 109 LKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLK 153


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 71  TRKWAPKLHESSTCFNRN 18
           TR+ A KLH S TC   +
Sbjct: 86  TREIAEKLHVSHTCIENH 103


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 332 LSHTVPLRVKSGQSCG 285
           + H +PL+ +S + CG
Sbjct: 138 MDHQLPLKQRSSEFCG 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,178
Number of Sequences: 438
Number of extensions: 3126
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)