Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11l13
(558 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79260.1 68414.m09240 expressed protein 89 2e-18
At5g22140.2 68418.m02577 pyridine nucleotide-disulphide oxidored... 31 0.39
At5g22140.1 68418.m02578 pyridine nucleotide-disulphide oxidored... 31 0.39
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 29 1.6
At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger) fa... 28 3.7
At2g21850.1 68415.m02596 DC1 domain-containing protein contains ... 28 3.7
At2g08986.1 68415.m01009 hypothetical protein 28 3.7
At1g33600.1 68414.m04159 leucine-rich repeat family protein cont... 28 3.7
At3g44190.1 68416.m04738 pyridine nucleotide-disulphide oxidored... 28 4.9
At5g15890.1 68418.m01859 expressed protein 27 6.4
At3g02440.1 68416.m00231 expressed protein 27 6.4
At3g51870.1 68416.m05688 mitochondrial substrate carrier family ... 27 8.5
At2g02550.1 68415.m00194 exonuclease family protein contains sim... 27 8.5
>At1g79260.1 68414.m09240 expressed protein
Length = 166
Score = 89.0 bits (211), Expect = 2e-18
Identities = 51/159 (32%), Positives = 81/159 (50%)
Frame = +2
Query: 41 IHEALAPISWLEGRWSTTDGRGYYPNIPDFTYHEDLEFLCIGQPMYNFLSTSRHPEKQTP 220
+H +AP+S+L G W G G YP IP F Y E++ F G+P+ + + E P
Sbjct: 16 VHPFVAPLSYLLGTWRG-QGEGEYPTIPSFRYGEEIRFSHSGKPVIAYTQKTWKLESGAP 74
Query: 221 MHQERGFLRIKPGTNELSFVVSHNFGLTSLEEGLCETETHQVILETVNLSRISFAKPPFV 400
MH E G+ R +P + V++ + GL +++G T+ V +++ L V
Sbjct: 75 MHAESGYFRPRP-DGSIEVVIAQSTGLVEVQKG-----TYNVDEQSIKLKSDLVGNASKV 128
Query: 401 KKIKRVFKLLSDDHLEATLYMETDTTPMSEHLKAVYKKI 517
K+I R F+L+ D L + M T T P+ HLKA+ K+
Sbjct: 129 KEISREFELV-DGKLSYVVRMSTTTNPLQPHLKAILDKL 166
>At5g22140.2 68418.m02577 pyridine nucleotide-disulphide
oxidoreductase family protein contains Pfam profile
PF00070 Pyridine nucleotide-disulphide oxidoreductase
domain
Length = 311
Score = 31.5 bits (68), Expect = 0.39
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 86 STTDGRGYYPNIPDFTYHEDLEFLCIGQPM 175
S +DG Y T H D+ FLC+G+P+
Sbjct: 150 SASDGNKIYRTSGGETIHADIHFLCVGKPL 179
>At5g22140.1 68418.m02578 pyridine nucleotide-disulphide
oxidoreductase family protein contains Pfam profile
PF00070 Pyridine nucleotide-disulphide oxidoreductase
domain
Length = 365
Score = 31.5 bits (68), Expect = 0.39
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 86 STTDGRGYYPNIPDFTYHEDLEFLCIGQPM 175
S +DG Y T H D+ FLC+G+P+
Sbjct: 204 SASDGNKIYRTSGGETIHADIHFLCVGKPL 233
>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
Length = 746
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 478 CSISFHIQCCFQVIITQ*FENPLNFFHKGW 389
C I+FHI+C VI+ + ++ ++F+ W
Sbjct: 609 CEINFHIECIKAVIVPRKIKSHSHYFYNFW 638
>At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 878
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 213 CFSG-CLDVDRKLYMGCPMQRNSKS 142
CF C+DV K++ CP+ RNS+S
Sbjct: 637 CFHAKCIDVWLKIHGSCPLCRNSRS 661
>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 772
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 478 CSISFHIQCCFQVIITQ*FENPLNFFH 398
C+ISFHI+C VI Q + F+H
Sbjct: 560 CNISFHIKCSKAVIFPQQTSHNHRFYH 586
>At2g08986.1 68415.m01009 hypothetical protein
Length = 1218
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +3
Query: 21 SVKTCRRFMKLWRPFPGWKAVGPQLMAEDIIRTYQTLHIMKTWSFSALDSPCTISYRRQG 200
++++ ++ +K +P P K V + ED T H+ ++ AL S + + Q
Sbjct: 52 ALRSKKKVVKELKPQPDLKGVRIVSLLED---TKTKTHMEFGYTMKALRSKKKVELKPQP 108
Query: 201 TLKSRRRCI 227
LKSR+ CI
Sbjct: 109 DLKSRKNCI 117
>At1g33600.1 68414.m04159 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to
gi|9294355|dbj|BAB02252 [Arabidopsis thaliana]
Length = 478
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +2
Query: 257 GTNELSFVVSHNFGLTSLEEGLCETETHQVILETVNLSRISFA--KPPFVKKIKRVFKL- 427
G L ++S NFG L E + + L+++ LSR F+ PP + +K +
Sbjct: 193 GLANLKILLSLNFGNNRLSETIPDIFKSMQKLQSLTLSRNKFSGNLPPSIASLKPILNYL 252
Query: 428 -LSDDHLEATL 457
LS ++L T+
Sbjct: 253 DLSQNNLSGTI 263
>At3g44190.1 68416.m04738 pyridine nucleotide-disulphide
oxidoreductase family protein low similarity to
dihydrolipoamide dehydrogenase from Clostridium magnum
[GI:472330]; contains Pfam profile PF00070 Pyridine
nucleotide-disulphide oxidoreductase domain
Length = 367
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 86 STTDGRGYYPNIPDFTYHEDLEFLCIGQPM 175
S +DG Y T H D FLC G+P+
Sbjct: 204 SASDGSKTYRTSGGETIHADCHFLCTGKPL 233
>At5g15890.1 68418.m01859 expressed protein
Length = 526
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = +2
Query: 77 GRWSTTDGRGYYPNIPDFTYHEDLEFLCIGQPMYNFLSTSRHPEK-QTPMHQERGFLRIK 253
G W + YY N + HE + G+P F+ PE P+ + FL +
Sbjct: 192 GEWVPNEEAPYYTNTTCWAIHEHQNCMKYGRPDTGFMRWRWKPESCDLPIFDPQEFLEMV 251
Query: 254 PG 259
G
Sbjct: 252 RG 253
>At3g02440.1 68416.m00231 expressed protein
Length = 373
Score = 27.5 bits (58), Expect = 6.4
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Frame = +2
Query: 77 GRWSTTDGRGYYPNIPDFTYHEDLEFLCIGQPMYNFLSTSRHP-EKQTPMHQERGFLRIK 253
G W YY N HE + G+P F+ P E P+ FL I
Sbjct: 132 GEWIPNPKAPYYTNTTCRAIHEHQNCIKYGRPDLGFMKWRWKPKECDLPLFDPYEFLEIV 191
Query: 254 PGTNELSFV 280
GT ++FV
Sbjct: 192 RGT-RMAFV 199
>At3g51870.1 68416.m05688 mitochondrial substrate carrier family
protein peroxisomal Ca-dependent solute carrier -
Oryctolagus cuniculus, EMBL:AF004161
Length = 381
Score = 27.1 bits (57), Expect = 8.5
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +3
Query: 96 MAEDIIRTYQTLHIMKTWSFSALDSPCTISYRRQGTLKSRRRCIRNEASFASSLGQMSCL 275
M ED R T H + + + S + T S + G + RRR +RN A LG+ +C+
Sbjct: 1 MEED--RAILTFHRIPSLNSSLIT---TSSPAKSGAEQFRRRVLRNPARGDFGLGRFACI 55
Query: 276 S 278
S
Sbjct: 56 S 56
>At2g02550.1 68415.m00194 exonuclease family protein contains
similarity to exonuclease I [Homo sapiens]
gi|4249655|gb|AAD13754
Length = 200
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 449 ATLYMETDTTPMSEHLKAVYKKIQ 520
A ++E TTP SEH+ V KK++
Sbjct: 45 ARKFLEEPTTPNSEHIMFVIKKVK 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,142,048
Number of Sequences: 28952
Number of extensions: 250590
Number of successful extensions: 605
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -