Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l09
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46583| Best HMM Match : Hus1 (HMM E-Value=0)                       140   1e-33
SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_46583| Best HMM Match : Hus1 (HMM E-Value=0)
          Length = 646

 Score =  140 bits (338), Expect = 1e-33
 Identities = 66/150 (44%), Positives = 99/150 (66%)
 Frame = +1

Query: 220 IVSTISKLSKECVLRIADDMLYFIVSDENTGPAPPVLWCEIPQSVFFSEYQLVGMDETHQ 399
           ++ TIS+++K   LR+    LYFI +D         +WCE+ Q   F EY++ G DET+ 
Sbjct: 321 VLGTISRMAKTATLRLTPTKLYFIFAD-TVASGGISIWCELNQCNIFDEYRIEGTDETN- 378

Query: 400 DIYLGLNSGNLARSFVSLKNVKSLKMKLTKKQCPCLTLEIEVPSTTSHQTRQIVHDIPVA 579
           +IYL L   NL+R+  S  N +++K+KLTKK  PC+T EI +PS ++H TR + HD+PV+
Sbjct: 379 NIYLELIPENLSRAMRSASNAQAVKIKLTKKHVPCITFEIILPSLSAH-TRTVTHDVPVS 437

Query: 580 VVPWKNWPDFYEPRVPDPDISIELPSLKQL 669
           V+P +NW ++ EP +PD D+SI +P LK L
Sbjct: 438 VIPQRNWDEYAEPNMPDVDVSIYMPPLKVL 467


>SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1168

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 325 VLWCEIPQSVFFSEYQLVGMDETHQ-DIYLGLNSGNLARSFVSLKNVKSLKMKL 483
           V+  E+ +    S+Y +V +DE H+  +Y  +  G L+R  V L+  +  K+KL
Sbjct: 393 VMLKEVEKDFLLSKYSVVVIDEAHERSVYTDILIGLLSR-IVPLRAKQGNKLKL 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,547,163
Number of Sequences: 59808
Number of extensions: 434471
Number of successful extensions: 901
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)