Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l09
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF117337-1|AAD22029.1|  277|Caenorhabditis elegans Hus1-like pro...    61   8e-10
AF106587-2|AAC78225.1|  277|Caenorhabditis elegans Human hus1 re...    61   8e-10
U23450-8|AAK31471.1|  350|Caenorhabditis elegans Hypothetical pr...    32   0.32 
Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical p...    31   0.74 
Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in ...    28   6.9  
Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z73969-9|CAE17694.1|  244|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z68318-8|CAH10783.1|  465|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z68318-3|CAD57704.1|  337|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z68318-2|CAA92692.1|  434|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AL117206-10|CAB60452.2|  258|Caenorhabditis elegans Hypothetical...    27   9.1  

>AF117337-1|AAD22029.1|  277|Caenorhabditis elegans Hus1-like
           protein protein.
          Length = 277

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 7/175 (4%)
 Frame = +1

Query: 166 MKFRAVMNNSSPIREFSTIVSTISKLSKE-CVLRIADDMLYFIVSDENTGPAPPVLW--C 336
           MKF +++ +++ I  F  I++++SKLSK+ C ++I  + L FI     +G      W   
Sbjct: 1   MKFSSLLQDTAAIDVFIKILTSVSKLSKKRCCVKIEKNALNFICC---SGLHDGGSWFSL 57

Query: 337 EIP-QSVFFSEYQLVGMDETHQD---IYLGLNSGNLARSFVSLKNVKSLKMKLTKKQCPC 504
            IP  S  F ++ +VGM+  +++   IY  L   +L R          LK+  ++K  P 
Sbjct: 58  SIPYSSQIFRKFDMVGMNPRNEEQNLIYFELEIDSLVRVLPGGHCYLKLKLSKSQKDEPM 117

Query: 505 LTLEIEVPSTTSHQTRQIVHDIPVAVVPWKNWPDFYEPRVPDPDISIELPSLKQL 669
           L++E+  P         + H IP+ ++  K W  +  P +    +SI +P  K +
Sbjct: 118 LSVEVRNPEADI-----VSHQIPITIILSKYWNSYSRPSIGHRKMSISMPPPKMM 167


>AF106587-2|AAC78225.1|  277|Caenorhabditis elegans Human hus1
           related protein 1 protein.
          Length = 277

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 7/175 (4%)
 Frame = +1

Query: 166 MKFRAVMNNSSPIREFSTIVSTISKLSKE-CVLRIADDMLYFIVSDENTGPAPPVLW--C 336
           MKF +++ +++ I  F  I++++SKLSK+ C ++I  + L FI     +G      W   
Sbjct: 1   MKFSSLLQDTAAIDVFIKILTSVSKLSKKRCCVKIEKNALNFICC---SGLHDGGSWFSL 57

Query: 337 EIP-QSVFFSEYQLVGMDETHQD---IYLGLNSGNLARSFVSLKNVKSLKMKLTKKQCPC 504
            IP  S  F ++ +VGM+  +++   IY  L   +L R          LK+  ++K  P 
Sbjct: 58  SIPYSSQIFRKFDMVGMNPRNEEQNLIYFELEIDSLVRVLPGGHCYLKLKLSKSQKDEPM 117

Query: 505 LTLEIEVPSTTSHQTRQIVHDIPVAVVPWKNWPDFYEPRVPDPDISIELPSLKQL 669
           L++E+  P         + H IP+ ++  K W  +  P +    +SI +P  K +
Sbjct: 118 LSVEVRNPEADI-----VSHQIPITIILSKYWNSYSRPSIGHRKMSISMPPPKMM 167


>U23450-8|AAK31471.1|  350|Caenorhabditis elegans Hypothetical
           protein C30B5.7 protein.
          Length = 350

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 394 HQDIYLGLNSGNLARSFVSLKNVKSLKMKLTKKQCP 501
           H  +YL LN    AR+F   K V S +M L+KKQ P
Sbjct: 296 HFFVYLALNKEFRARTFRMFKMVHSEEMSLSKKQSP 331


>Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical
           protein B0035.12 protein.
          Length = 836

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 550 RQIVHDIPVAVVPWKNWPDFYEPRVPDPDIS 642
           RQ V   P+  + WKNW + ++ R P+P ++
Sbjct: 60  RQFVEWAPLNPLNWKNWIEDFQNRKPEPSVA 90


>Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical
           protein C04G2.6 protein.
          Length = 1029

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 499 DTVSLLTSFLMILHFSRRQKILRDYPNSIL 410
           DT S++  F+++ + S  +KIL +YP+  L
Sbjct: 670 DTHSMVEEFMLLANISVAEKILEEYPDCAL 699


>AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform b protein.
          Length = 871

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +1

Query: 97  VCNSSSHFARIKQLFSKDEKHITMKFRAVMNNSSPIREFSTIVSTISKLSKECVLRIADD 276
           VC+   +F  +K    K    I+ +  +    S      ST  ST S  S   + R   D
Sbjct: 33  VCDLHHNFPIVKNR-RKYHNSISTQSSSSTTTSLERISTSTCTSTSSSASDAIISRAEKD 91

Query: 277 MLYFIVSDENT 309
           +  F+VSDE+T
Sbjct: 92  VQTFLVSDEST 102


>Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical
           protein W04D2.2a protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 396 VSFIHSNQLIFREKYTLWYFTP 331
           + F+ +  L+F  KY  W++TP
Sbjct: 159 IYFLFTAPLVFNSKYLAWFYTP 180


>Z73969-9|CAE17694.1|  244|Caenorhabditis elegans Hypothetical
           protein C12D8.13 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 167 IVICFSSFENSCLIRAK*DDELHTILRYIIISN*TQFRHVIYVLFFQYCVV 15
           +V CF    ++ LI  K  D ++   +Y+     T   HVI +L FQY ++
Sbjct: 122 LVDCFMIMSSTVLIVIKLKD-VYNHPKYLSNYELTSINHVIIILLFQYLML 171


>Z68318-8|CAH10783.1|  465|Caenorhabditis elegans Hypothetical
           protein T21B10.2c protein.
          Length = 465

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
 Frame = +1

Query: 337 EIPQSVFFSEYQLVGMDETH-QDI------YLGLNSGNLARSFVSLKNVKSLKMKLTKKQ 495
           E+ QS F  EY +V +++   QD       + G  S  L    +++ N K ++  + KK 
Sbjct: 310 ELYQS-FIKEYPVVSIEDAFDQDDWDNWGKFHGATSIQLVGDDLTVTNPKRIQTAIDKKS 368

Query: 496 CPCLTLEI-EVPSTT 537
           C CL L++ ++ S T
Sbjct: 369 CNCLLLKVNQIGSVT 383


>Z68318-3|CAD57704.1|  337|Caenorhabditis elegans Hypothetical
           protein T21B10.2b protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
 Frame = +1

Query: 337 EIPQSVFFSEYQLVGMDETH-QDI------YLGLNSGNLARSFVSLKNVKSLKMKLTKKQ 495
           E+ QS F  EY +V +++   QD       + G  S  L    +++ N K ++  + KK 
Sbjct: 182 ELYQS-FIKEYPVVSIEDAFDQDDWDNWGKFHGATSIQLVGDDLTVTNPKRIQTAIDKKS 240

Query: 496 CPCLTLEI-EVPSTT 537
           C CL L++ ++ S T
Sbjct: 241 CNCLLLKVNQIGSVT 255


>Z68318-2|CAA92692.1|  434|Caenorhabditis elegans Hypothetical
           protein T21B10.2a protein.
          Length = 434

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
 Frame = +1

Query: 337 EIPQSVFFSEYQLVGMDETH-QDI------YLGLNSGNLARSFVSLKNVKSLKMKLTKKQ 495
           E+ QS F  EY +V +++   QD       + G  S  L    +++ N K ++  + KK 
Sbjct: 279 ELYQS-FIKEYPVVSIEDAFDQDDWDNWGKFHGATSIQLVGDDLTVTNPKRIQTAIDKKS 337

Query: 496 CPCLTLEI-EVPSTT 537
           C CL L++ ++ S T
Sbjct: 338 CNCLLLKVNQIGSVT 352


>Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical
           protein F18H3.4 protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 293 SAMKTLDQPLRYYGVKYHKVYFSLNI--NWLEWMKLTKTFI*D*IRVISQDL 442
           S  K +DQ L    ++ HKVYF L    N  + MK  +  I D IR +   L
Sbjct: 154 SHRKGMDQELEKNRIQKHKVYFELTSCQNRFKQMKQERRHIEDEIRDLKHQL 205


>AL117206-10|CAB60452.2|  258|Caenorhabditis elegans Hypothetical
           protein Y67A10A.2 protein.
          Length = 258

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -1

Query: 490 SLLTSFLMILHFSRRQKILRDYPN 419
           ++L SFL++L F+R++K+L  Y N
Sbjct: 92  TVLYSFLIVLLFNRKKKLLATYVN 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,764,439
Number of Sequences: 27780
Number of extensions: 341954
Number of successful extensions: 983
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)