Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l09
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.21 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.0  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.6  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.6  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.1  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 403 IYLGLNSGNLARSFVSLKNVKSLKMKL-TKKQCPCLTLEIEVPSTTSHQTRQIVHDIPVA 579
           ++  L +  L    + L+++K +  +  TK     L  E ++        ++ +  +P  
Sbjct: 202 MFCNLENVKLKELRIILEDIKHINTRHNTKNGMKTLLSETDIWEVEQILAKKEIKGVPTY 261

Query: 580 VVPWKNW 600
           ++ WKNW
Sbjct: 262 LIKWKNW 268


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 523 VPSTTSHQTRQIVHDIPVAVVPWKNW 600
           VP T  + TR++  D    + P+ NW
Sbjct: 84  VPLTLGYVTREVSIDGNPLIAPYPNW 109


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 589 WKNWPDFYEPRVP 627
           W +WP+  EP  P
Sbjct: 175 WNDWPEELEPGTP 187


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 589 WKNWPDFYEPRVP 627
           W +WP+  EP  P
Sbjct: 175 WNDWPEELEPGTP 187


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 198 RRVIHNSTEFHSDMF 154
           RR+ H S  FH D +
Sbjct: 649 RRIFHKSDTFHKDSY 663


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 198 RRVIHNSTEFHSDMF 154
           RR+ H S  FH D +
Sbjct: 617 RRIFHKSDTFHKDSY 631


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 589 WKNWPDFYEPRVP 627
           W +WP+  EP  P
Sbjct: 175 WNDWPEELEPGTP 187


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 460 HFSRRQKILRDYPNSIL 410
           H S  QK+ ++ PNSI+
Sbjct: 162 HISVAQKLQKEIPNSII 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,272
Number of Sequences: 438
Number of extensions: 4746
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)