Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l09
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61310.1 68414.m06910 disease resistance protein (CC-NBS-LRR ...    30   1.6  
At3g52250.1 68416.m05742 myb family transcription factor contain...    29   2.1  
At2g38650.1 68415.m04747 glycosyl transferase family 8 protein c...    29   3.7  
At4g13620.1 68417.m02120 AP2 domain-containing transcription fac...    28   6.5  
At3g01350.1 68416.m00055 proton-dependent oligopeptide transport...    28   6.5  
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica...    27   8.5  
At1g51910.1 68414.m05851 protein kinase family protein contains ...    27   8.5  

>At1g61310.1 68414.m06910 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 925

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 432 RKIFCLLEKCKIIKNEVNKETVSVP 506
           +K+F LLE+ KI+K+E N + VS P
Sbjct: 117 KKVFLLLEEVKILKSEGNFDEVSQP 141


>At3g52250.1 68416.m05742 myb family transcription factor contains
            Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 1677

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 295  SDENTGPAPPVLWCEIPQSVFFSEYQLVGMDETHQDIYLGLNSGNLARSFVS 450
            S+E+ G   P+ W +  +S F   + L G +      Y+G  S +  + F S
Sbjct: 1099 SEESCGETGPIHWTDDERSAFIQGFSLFGKNFASISRYVGTRSPDQCKVFFS 1150


>At2g38650.1 68415.m04747 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 619

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
 Frame = +1

Query: 106 SSSHFARIKQLFSKDEKHITMKFRAVMNNS-SPIREFSTIVSTISKLSKECVLRIADDML 282
           S SH+  + +LF K EK + +    V+    SP+ +   +   ++   K C +R+   + 
Sbjct: 430 SQSHYL-LPKLFDKLEKVVILDDDVVVQRDLSPLWDLD-MEGKVNGAVKSCTVRLGQ-LR 486

Query: 283 YFIVSDENTGPAPPVLWCEIPQSVFFSEYQLVGMDETHQDIYLGLNSGNLARSFVSLK 456
                + +T      LW      V  + ++ +G+ ET+Q  Y  ++SG+ +   ++L+
Sbjct: 487 SLKRGNFDTNAC---LWMSGLNVVDLARWRALGVSETYQKYYKEMSSGDESSEAIALQ 541


>At4g13620.1 68417.m02120 AP2 domain-containing transcription
           factor, putative similar to AP2 domain containing
           protein RAP2.4 [Arabidopsis thaliana] GI:2281633;
           contains Pfam profile PF00847: AP2 domain
          Length = 388

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 529 STTSHQTRQIVHDIPVAVVPWKNWPDFYEPRVPD 630
           S   H+    +H  PVA VPW     F + + PD
Sbjct: 105 SPHDHELTSSIHPSPVASVPWNFLESFPQSQHPD 138


>At3g01350.1 68416.m00055 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 563

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +1

Query: 454 KNVKSLKMKLTKKQ-CPCLTLEIEVPSTTS 540
           K++ +++++L ++  C C T +IE PSTTS
Sbjct: 262 KDLDAMELELEERPLCKCETEDIETPSTTS 291


>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 862

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 130 KQLFSKDEKHITMKFRAVMNNSSPIREFSTIVSTISKLSKEC 255
           +QL+   E       + ++NN S +R +ST++S I +L + C
Sbjct: 531 RQLYDHMEGEAKGVVQNLINNGSLMRNYSTVLSIILRLRQLC 572


>At1g51910.1 68414.m05851 protein kinase family protein contains
           Serine/Threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 876

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +1

Query: 115 HFARIKQLFSKDEKHITMKFRAVMNNSSPIREFSTIVSTISKLSKECVLRIADDMLYFIV 294
           HFA I+ L + D +   + +       S IR  +  ++TI   S    L  +D    F  
Sbjct: 279 HFAEIQNLKANDIREFNITYNGGQVWESSIRPHNLSITTI---SSPTALNSSDGFFNFTF 335

Query: 295 SDENTGPAPPVL 330
           +   T   PP++
Sbjct: 336 TMTTTSTLPPLI 347


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,422,377
Number of Sequences: 28952
Number of extensions: 296268
Number of successful extensions: 779
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)