Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11l08
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.48
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 28 1.1
SPAC167.04 |pam17||presequence translocase-associated motor subu... 28 1.5
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 28 1.5
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 28 1.5
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 27 2.5
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 27 3.4
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 3.4
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 26 5.9
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 5.9
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.8
SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.8
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 7.8
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.5 bits (63), Expect = 0.48
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = -2
Query: 405 YCRKYLSNLA--FLASLSESVDMSRSLGTHEEELDEK 301
Y +K L+N+ F A SE+ D+SR L T E+LD+K
Sbjct: 184 YFQKKLTNMESNFSAKQSEAYDLSRQLLTVTEKLDKK 220
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = +2
Query: 326 VPSERDISTDSEREARKARLDKYLRQYTNKRTSKK----TLTPSNKVSEVVTKPTNNNDP 493
+ S IST+ + + +K ++ N ++++K T TPS +SE KP++ +
Sbjct: 1207 IKSSPAISTNGKTQPKKQTANRRQSGKPNVKSAQKIESATRTPSPAISESRKKPSSKDTK 1266
Query: 494 VKTGYDEITIANFLQSLRAQKTEPYLQITTAPK 592
++T E + + ++++K + + + K
Sbjct: 1267 IETPSREQSRSQTASPVKSEKDDGNVSLNAEQK 1299
>SPAC167.04 |pam17||presequence translocase-associated motor subunit
Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 261 RPVLVIKRKKNPKTSHQALPRGCRVNETYL--QIRKGKPEKLGW 386
RP LV+KR ++PK L + C +TY I++ KP+ L W
Sbjct: 6 RPGLVVKRLQSPKI-FLTLWKTCYNVKTYSTESIKQKKPQDLNW 48
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 323 WVPSERDISTDSEREARKARLDKYLRQYTNKRTSKKTLTPSNKVSEVVTKPTNN 484
++P+E I T SER ARL+KY T+ TL P + V + + P+ N
Sbjct: 168 YLPAEY-IETPSER---LARLNKYKNSETSNSQQSVTLPPLDIVEKTLEAPSPN 217
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +2
Query: 248 KEMDEAGPSNKKEEEPQDFXXXXXXWVPSERDISTDSEREARKARLDKYLRQYTN--KRT 421
K+ + K++EE ++ W + RD+S S + A + KYL++ + ++T
Sbjct: 437 KKDEREKEKRKRQEEEEENNLDRTSW--TGRDLSASSTDHSLNASVGKYLKKEVSLEEKT 494
Query: 422 SKKTLTPSNK 451
T+ P K
Sbjct: 495 FTSTVNPKKK 504
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 176 RKGEPQKGKLIDRANERKSLDARLKEMDEAGPSNKKEEEPQDFXXXXXXWVPSERDISTD 355
+ PQ G+ D +E + +DA ++++ ++ EE + V E + TD
Sbjct: 110 KPARPQTGEGSDNEDEDEDIDALIEDLYSQDQEEEQVEEEESPGPAGAAKVVPEELLETD 169
Query: 356 SEREARKARLDKYLRQY-TNKRTSKKT 433
+ ++ +++ ++Y N+ +KT
Sbjct: 170 PKYGLTESEVEERKKKYGLNQMKEEKT 196
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 173 NRKGEPQKGKLIDRANERKSLDARLKEMDEAGPSNKKE 286
+RK PQKG + E KSL K++ + S+ K+
Sbjct: 146 SRKINPQKGNNNNLLKENKSLKTTAKDLSDISSSSMKK 183
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +2
Query: 362 REARKARLDKYLR--QYTNKRTSKKTLTPSN-KVSEVVTKPTNNNDPVKTGYDEITIANF 532
+ +++ LDK R Q+T K+ + + +++ + N+D +KT YDE + N
Sbjct: 369 KNQKQSLLDKQSRTSQFTTKKERDEWIRNQLLQINRNINSTKENSDYLKTEYDE--MENE 426
Query: 533 LQSLRAQKTEPYLQITTAPKRIS 601
L++ ++K E + + + R+S
Sbjct: 427 LKAKLSRKKEIEISLESQGDRMS 449
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +2
Query: 80 EWSDGGRDVIYIKSVLEPNVQELKVGVLITANRKGEPQKGKLIDRANERKSLDARLKEMD 259
E+ GR+ + N+ ELK GV + + P+K I K LDAR E+
Sbjct: 787 EFPQNGREFWEAIKGADLNLSELKYGVFGFGDYEYWPRKEDKIYYNRPGKQLDARFVELG 846
Query: 260 EA 265
A
Sbjct: 847 AA 848
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 5.9
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Frame = +2
Query: 413 KRTSKKTLTPSNKVSEVVTKPTNNND--PVKTGYDEITIANFLQSLRAQKTEPYLQITTA 586
K+ + + S+ E V P ++ D P+ D T +QSL A T+P + I A
Sbjct: 1031 KQKYLQEIAASHVFMETVLSPLDSPDEEPILIKPDART-EELIQSLDATHTKPVINIAVA 1089
Query: 587 PKRISM-DSDTTLNFHEWFRELFRSFERVK 673
+ + D +TT+ + ++R L SF K
Sbjct: 1090 LQAGDVSDINTTVGWQLFYR-LLESFGHEK 1118
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = +2
Query: 410 NKRTSKKTLTPSNKVSEVVTKPTNNNDPVKTGYD----EITIANFLQSLRAQKTEP 565
N TS LTPS+ + + TNN + K Y E T ++F T+P
Sbjct: 100 NSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILESTSSDFQSKDSLSTTQP 155
>SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 113
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -1
Query: 406 ILP*IFIQPSFSGFPFRICRYVSFTRHPR 320
IL IFI +F FPF CRY S PR
Sbjct: 3 ILKRIFIIRNFI-FPFSNCRYASTVPSPR 30
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 588 GAVVIWRYGSVFWARNDCRKFAIVISS 508
G VI RY + FW +N R F I+ S
Sbjct: 860 GKKVILRYAAAFWRKN-IRSFGIIPKS 885
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,435
Number of Sequences: 5004
Number of extensions: 62992
Number of successful extensions: 237
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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