Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11l08
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0046 + 4533959-4533988,4534061-4534136,4534225-4535111,454... 31 0.86
01_06_0191 - 27334412-27335155 30 2.0
05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420 29 2.6
03_03_0256 + 15898702-15900420 29 4.6
11_01_0790 + 6617659-6619593,6619696-6620106 28 6.0
06_03_0729 + 23927656-23927661,23927774-23927923,23928316-239285... 28 6.0
01_06_1572 + 38319544-38319849,38320427-38320513,38320584-383206... 28 6.0
04_03_0049 - 10158876-10159381,10159823-10159904 28 8.0
01_06_1768 + 39771025-39771241,39771284-39771513,39772165-397722... 28 8.0
>10_02_0046 +
4533959-4533988,4534061-4534136,4534225-4535111,
4546711-4546746
Length = 342
Score = 31.1 bits (67), Expect = 0.86
Identities = 18/86 (20%), Positives = 33/86 (38%)
Frame = +2
Query: 242 RLKEMDEAGPSNKKEEEPQDFXXXXXXWVPSERDISTDSEREARKARLDKYLRQYTNKRT 421
R +E ++ P +K D V + D + E K ++ + + RT
Sbjct: 97 RKREQAKSAPQKRKAPASTDSDADDEDTVDDQYDEEEGEDEEEAKVAVEPAANEPADNRT 156
Query: 422 SKKTLTPSNKVSEVVTKPTNNNDPVK 499
TP+ VVT +N+ P++
Sbjct: 157 ETHGYTPTPSPDHVVTGVESNSSPLR 182
>01_06_0191 - 27334412-27335155
Length = 247
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 464 VTKPTNNNDPVKTGYDEITIANFLQSLR 547
+T TNNN V TG E+T+ N L +++
Sbjct: 143 ITSTTNNNVNVSTGVVEVTVTNALSAVK 170
>05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420
Length = 433
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 71 LLVEWSDGGRDVIYIKSVLEPNVQELKVGVLITANRKGEPQKGKLIDRAN-ERKSLDARL 247
L+++W DG V + P +L+ G + AN+ G P K +++ +N +S D
Sbjct: 309 LILDWFDGSMKVSTSSNAFYPQGGDLRQGTM--ANQGGGPSKHIMVEASNISGQSKDVSN 366
Query: 248 KEMDEAGPSNKKEEEPQD 301
M + +E+ P D
Sbjct: 367 PLMPNKEEIHGEEKIPND 384
>03_03_0256 + 15898702-15900420
Length = 572
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 242 RLKEMDEAGPSNKKEEEPQDFXXXXXXWVPSERDISTDSEREARKARLDKYLRQYTNKRT 421
RL+ DE G +N++ P+ W+ + ++EA A L + RQY
Sbjct: 158 RLQSKDEEG-ANQEPLPPEAKNPASDEWILRNKQSPWAGKKEAPPAELTEEQRQYAEAHA 216
Query: 422 SKK 430
+KK
Sbjct: 217 AKK 219
>11_01_0790 + 6617659-6619593,6619696-6620106
Length = 781
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 59 NENWLLVEWSDGGRDVIYIKSVLEPNVQELKVGVLITANR 178
N +L + W G D + + + PN+ L++ +I+ANR
Sbjct: 650 NLRYLALSWCQLGEDPLRVLGLHVPNLTYLRLNSMISANR 689
>06_03_0729 +
23927656-23927661,23927774-23927923,23928316-23928567,
23929072-23929209,23931213-23932730
Length = 687
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 243 RASNDLRSFARSMSFPFCGSPFLFAVIRT 157
R N LR+FARS+ PF +P L + T
Sbjct: 451 RTGNRLRAFARSIHLPFHFTPLLLSCATT 479
>01_06_1572 +
38319544-38319849,38320427-38320513,38320584-38320676,
38321491-38321567,38321974-38322562,38322701-38322794,
38322884-38322996,38323438-38323524,38323842-38323964,
38324058-38324192,38324437-38324484,38324993-38325094,
38325321-38325716
Length = 749
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Frame = +2
Query: 107 IYIKSVLEPNVQELKVGVLITANRKGEPQKGKLIDRAN-------ERKSLDARLKEMDEA 265
+ +K L P V++ V + G+ Q+ +L+DR +R++L +KEM E+
Sbjct: 432 VAVKRRLPPEVKQKLAKVARLSANHGKIQEHELMDRLMGIVGHLVQRRTLRRNMKEMVES 491
Query: 266 GPSNKKEE 289
G S K+E+
Sbjct: 492 GLSAKQEK 499
>04_03_0049 - 10158876-10159381,10159823-10159904
Length = 195
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 570 SKLPQHR-RE*VWTVIPLLTSTNGSGNFLDH 659
S++P++R +E +W+V+P TS G G H
Sbjct: 2 SEVPRNRHQEKIWSVLPNPTSNGGEGESTSH 32
>01_06_1768 +
39771025-39771241,39771284-39771513,39772165-39772245,
39772468-39772824,39772942-39773046
Length = 329
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 252 KWTRPVLVIKRKKNPKTSHQALPRGCRVNETYLQIRKGKPEKLGWINIYGNILTS 416
K+ RP+ + K +NP + Q + N T +GKP+ + I G+++ S
Sbjct: 160 KYKRPLWITKALENPTVTVQEMSMQSTSNLTIKWTFRGKPKNPIFATIGGDLIVS 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,517,644
Number of Sequences: 37544
Number of extensions: 384305
Number of successful extensions: 1108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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