Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l08
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    30   0.018
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.68 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.3  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +2

Query: 368 ARKARLDKYLRQYTNKRTSKKTLTPSNKVSEVVTKPTNNNDPVKTGYDEITIANFLQSLR 547
           A+K + DK +     K  S ++LT +  VS + T  T+NN  ++     +     ++SLR
Sbjct: 696 AKKVKKDKDIILNVPKE-STQSLTTTGNVSYLTTNNTSNNSQLQIPRASLVSTTSVKSLR 754

Query: 548 AQ--KTEPY-LQITTA 586
            +  +T PY +++T A
Sbjct: 755 LEGDETPPYGMELTEA 770


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +2

Query: 383 LDKYLRQYTNKRTSKKTLTPSNKVSE---VVTKPTNNNDPVKTGY 508
           + + LR+   +R  ++T  P ++ ++   V++ P NNND   T +
Sbjct: 167 VQQLLRRAQIRRNERRTPDPHDETAKKPRVLSPPLNNNDATPTDF 211


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 657 DLKSSLNHSWKLRVVSLSILILFGAVVI 574
           D K+  N  W L +V +  L LFG V++
Sbjct: 180 DEKTDANSWWALILVIVPCLTLFGNVLV 207


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 255 WTRPVLVIKRKKNPKTSHQA 314
           WT P+  +KRK   K+ ++A
Sbjct: 507 WTAPIYTLKRKGLIKSENEA 526


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 255 WTRPVLVIKRKKNPKTSHQA 314
           WT P+  +KRK   K+ ++A
Sbjct: 507 WTAPIYTLKRKGLIKSENEA 526


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 255 WTRPVLVIKRKKNPKTSHQA 314
           WT P+  +KRK   K+ ++A
Sbjct: 507 WTAPIYTLKRKGLIKSENEA 526


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 4/11 (36%), Positives = 9/11 (81%)
 Frame = -3

Query: 617 WYHCPYLFSSV 585
           W+HCP ++ ++
Sbjct: 473 WHHCPEIYKAI 483


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 369 PEKLGWINIYGNILTS 416
           P  L W++I+GN + S
Sbjct: 570 PGNLKWLDIHGNFIES 585


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 635 WFRELFRSFERVKCETAP 688
           W R+  R+F R+ C   P
Sbjct: 393 WSRDFRRAFVRILCACCP 410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,785
Number of Sequences: 438
Number of extensions: 4600
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)