Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11l07
(755 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_27807| Best HMM Match : C2 (HMM E-Value=0) 35 0.062
SB_45184| Best HMM Match : C2 (HMM E-Value=1.1e-22) 35 0.082
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 35 0.082
SB_41604| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.082
SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.082
SB_29967| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_794| Best HMM Match : C2 (HMM E-Value=1e-23) 31 0.76
SB_50693| Best HMM Match : C2 (HMM E-Value=0) 31 1.0
SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_19229| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_43325| Best HMM Match : C2 (HMM E-Value=1.1e-22) 30 2.3
SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_23551| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_53875| Best HMM Match : Glu_synthase (HMM E-Value=0) 29 4.1
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) 29 4.1
SB_40174| Best HMM Match : Copine (HMM E-Value=5.5e-20) 28 7.1
SB_11279| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_21545| Best HMM Match : FerB (HMM E-Value=3.1e-30) 28 9.4
>SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 73.3 bits (172), Expect = 2e-13
Identities = 41/111 (36%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Frame = +1
Query: 364 STYHQLSLTVESANIKN-SGLF-KPNPYLQVIIDDKIL-RKTEVIRNTLHPKWKEDLTIL 534
S + QL +T+ A +K +G F K +PY+++I+D K +KTE ++ T P W E+ T+L
Sbjct: 122 SQFSQLKVTIAKAKLKEQTGWFAKGDPYVKLIVDAKNPPKKTEAVKKTWEPVWDENFTVL 181
Query: 535 VTPQSQLLFRLADYHSFRKDNVIGEKKVNLLKVLFYCNGKCENLELTLDLM 687
VTP S L + + S + D +G KV L+ VL C GK + L L ++
Sbjct: 182 VTPYSVLDLEVNNRFSLKSDVPLGAAKVELIDVLHKCRGKLNSHTLKLPIL 232
>SB_27807| Best HMM Match : C2 (HMM E-Value=0)
Length = 405
Score = 35.1 bits (77), Expect = 0.062
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +1
Query: 415 SGLFKPNPYLQVIIDDKILRKTEVIRNTLHPKWKEDLTILVTPQSQLL-----FRLADYH 579
SG P + ++ D K +T V R L+P W E T P ++L+ ++ DY
Sbjct: 157 SGTSDPFVKIMLLPDKKHKLETRVKRKNLNPVWNEVFTFEGFPHNKLMGKTLYMQVLDYD 216
Query: 580 SFRKDNVIGEKKVNL 624
F +++ IGE ++ L
Sbjct: 217 RFSRNDPIGEVEIPL 231
>SB_45184| Best HMM Match : C2 (HMM E-Value=1.1e-22)
Length = 344
Score = 34.7 bits (76), Expect = 0.082
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 319 TMNENISSLTAPISVSTYHQLSLT-VESANIKNSGLF-KPNPYLQVIIDDKILRKTEVIR 492
TM +++ T I S +L +T VE ++K+S +PY +V + + KT V
Sbjct: 249 TMFSHVTHSTRSIRTSGIGKLVVTIVEGVDLKSSDPSGMSDPYCEVSMGSQE-HKTRVCP 307
Query: 493 NTLHPKWKEDLTILVTPQSQ 552
TL+PKW +T V Q
Sbjct: 308 QTLNPKWNSTMTFTVKDMEQ 327
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 34.7 bits (76), Expect = 0.082
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 319 TMNENISSLTAPISVSTYHQLSLT-VESANIKNSGLF-KPNPYLQVIIDDKILRKTEVIR 492
TM +++ T I S +L +T VE ++K+S +PY +V + + KT V
Sbjct: 914 TMFSHVTHSTRSIRTSGIGKLVVTIVEGVDLKSSDPSGMSDPYCEVSMGSQE-HKTRVCP 972
Query: 493 NTLHPKWKEDLTILVTPQSQ 552
TL+PKW +T V Q
Sbjct: 973 QTLNPKWNSTMTFTVKDMEQ 992
>SB_41604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 406
Score = 34.7 bits (76), Expect = 0.082
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 319 TMNENISSLTAPISVSTYHQLSLT-VESANIKNSGLF-KPNPYLQVIIDDKILRKTEVIR 492
TM +++ T I S +L +T VE ++K+S +PY +V + + KT V
Sbjct: 249 TMFSHVTHSTRSIRTSGIGKLVVTIVEGVDLKSSDPSGMSDPYCEVSMGSQE-HKTRVCP 307
Query: 493 NTLHPKWKEDLTILVTPQSQ 552
TL+PKW +T V Q
Sbjct: 308 QTLNPKWNSTMTFTVKDMEQ 327
>SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 34.7 bits (76), Expect = 0.082
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 475 KTEVIRNTLHPKWKEDLTILVTPQSQLLFRLADY-HSFRKDNVIGEKKVNL 624
K++ + TL+P+W E + + P S ++ + Y RKD +G +++L
Sbjct: 309 KSKACKETLNPQWSEQFDLKMYPDSPMVLEITVYDRDIRKDEFMGRCQIDL 359
Score = 31.5 bits (68), Expect = 0.76
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 433 NPYLQVIIDDKILRKTEVIRNTLHPKWKEDLTILVTPQS-QLLFRLADYHSFRKDNVIGE 609
+PY++ D + + K+ I L+P+W E + + + ++ ++ D+ D+ +G
Sbjct: 153 DPYVKFKADGRQIYKSRTISKNLNPQWNEKFCVPIEDITVPMVLKVFDFDRVGNDDPMGR 212
Query: 610 KKVNLLKVLFYCNGKCENLELTLDL 684
V L ++ GK +EL L++
Sbjct: 213 ATVELSELEV---GKPIEMELDLEV 234
>SB_29967| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 32.3 bits (70), Expect = 0.44
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Frame = +1
Query: 403 NIKNSGLFKPNPYLQV-IIDDKILRKTEVIRNTLHPKWKE----DL-TILVTPQSQLLFR 564
N++ G K +PY+ V + K +KTEVI++ L+P W E DL ++P L +
Sbjct: 14 NVETVG--KSDPYVVVGFLGSK--KKTEVIKDELNPVWNEKFEWDLQKRALSPDESLHIQ 69
Query: 565 LADYHSFRKDNVIGEKKVNLLKVL 636
+ D+ ++ ++G+ V L +++
Sbjct: 70 VKDWERLGRNRLLGQATVPLKELV 93
>SB_794| Best HMM Match : C2 (HMM E-Value=1e-23)
Length = 583
Score = 31.5 bits (68), Expect = 0.76
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 427 KPNPYLQVIIDDKILRKTEVIRNTLHPKWKEDLTILVTPQSQLL 558
K +PY V + D+ R T V NT++P+W+E L V QL+
Sbjct: 69 KSDPYCIVAVGDQEQR-TAVQYNTINPEWRETLQFEVAGVPQLM 111
>SB_50693| Best HMM Match : C2 (HMM E-Value=0)
Length = 1049
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 433 NPYLQVIIDDKILRKTEVIRNTLHPKWKEDLTILVTPQSQLLFRLADYHSFRKDNVIGE 609
+PY V + +++KTEV + TL P W + V +Q+ A F KD+ I +
Sbjct: 496 DPYCVVYANRNLVKKTEVAKETLDPVWNAMVEFPVANFTQVTLSFA---VFDKDDAIDD 551
>SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 346 TAPISVSTYHQLSLT-VESANIKNSGLF-KPNPYLQVIIDDKILRKTEVIRNTLHPKWKE 519
T I S +L +T VE ++K+S +PY +V + + KT V TL+PKW
Sbjct: 214 TRSIRTSGIGKLVVTIVEGVDLKSSDPSGMSDPYCEVSMGSQE-HKTRVCPQTLNPKWNS 272
Query: 520 DLTILVTPQSQ 552
+T V Q
Sbjct: 273 TMTFTVKDMEQ 283
>SB_19229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 30.3 bits (65), Expect = 1.8
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Frame = +1
Query: 376 QLSLT-VESANIKNSGLFK-PNPYLQVIIDD---KILRK-TEVIRNTLHPKWKEDLTILV 537
+L +T VE+ ++K+ L +PY+++ + KI +K T V + TL+P + E T V
Sbjct: 217 KLQITIVEAKSLKSMDLTGYSDPYVKIALVQEGRKIKKKKTTVKKRTLNPYYNETFTFTV 276
Query: 538 T----PQSQLLFRLADYHSFRKDNVIGE 609
Q+ L+ + DY K +IG+
Sbjct: 277 AFEKIEQTSLIISVLDYDRVGKSEMIGK 304
>SB_43325| Best HMM Match : C2 (HMM E-Value=1.1e-22)
Length = 87
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 391 VESANIKNSGLF-KPNPYLQVIIDDKILRKTEVIRNTLHPKWKEDLTILVTPQSQ 552
VE ++K+S +PY +V + + KT V TL+PKW +T V Q
Sbjct: 17 VEGVDLKSSDPSGMSDPYCEVSMGSQE-HKTRVCPQTLNPKWNSTMTFTVKDMEQ 70
>SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1665
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +1
Query: 433 NPYLQVIIDDKILRKTEVIRNTLHPKWKEDLTI--LVTPQ-SQLLFRLADYHSFRKDNVI 603
NPY++V R T V +NT PKW E + L P ++ +L D S D VI
Sbjct: 409 NPYVEVQFAGHRARTT-VKKNTYEPKWNEQVVFSELFPPLCRRIKIQLKDSDSV-TDEVI 466
Query: 604 GEKKVNLLKV 633
G ++L ++
Sbjct: 467 GTHFIDLSRI 476
>SB_23551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +1
Query: 466 ILRKTEVIRNTLHPKWKEDLTILVTPQSQ-----LLFRLADYHSFRKDNVIGEKKVNL 624
++ KTEV + TL+P+W + + L R+ DY + + IG+ ++L
Sbjct: 36 VMNKTEVCKKTLNPQWDSEWFRFEVDDEELQDEPLQIRIMDYDTVTAHDAIGKVNISL 93
>SB_53875| Best HMM Match : Glu_synthase (HMM E-Value=0)
Length = 911
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +1
Query: 415 SGLFKPNPYL--QVIIDDKILR--KTEVIRNTLHPKWKEDLTILVTP 543
S L KPNP ++ +D +L EVIRN P+WK +V P
Sbjct: 145 SNLLKPNPESCKRLYLDHPVLSCGDLEVIRNCALPQWKSKTLKMVYP 191
>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
Length = 1075
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +1
Query: 415 SGLFKPNPYL--QVIIDDKILR--KTEVIRNTLHPKWKEDLTILVTP 543
S L KPNP ++ +D +L EVIRN P+WK +V P
Sbjct: 984 SNLLKPNPESCKRLYLDHPVLSCGDLEVIRNCALPQWKSKTLKMVYP 1030
>SB_40174| Best HMM Match : Copine (HMM E-Value=5.5e-20)
Length = 723
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +1
Query: 469 LRKTEVIRNTLHPKWK 516
+ +TEV++NTL+P WK
Sbjct: 108 VHRTEVVKNTLNPTWK 123
>SB_11279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = +1
Query: 433 NPYLQ-VIIDDKIL---RKTEVIRNTLHPKWKEDLTILVTPQSQLLFRLADYHSFRKDNV 600
+PY++ ++ DK R+T++ +NTL P + E ++ P++QL R D +
Sbjct: 13 DPYMRSYVLPDKSKSNRRRTDIAKNTLSPSFDEKFEWMI-PEAQLKDRTLDVTVKNDVSF 71
Query: 601 IGEKKVNLLKVL 636
+ K ++ +VL
Sbjct: 72 FSKSKTSMGQVL 83
>SB_21545| Best HMM Match : FerB (HMM E-Value=3.1e-30)
Length = 1142
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +1
Query: 421 LFKPNPYLQVIIDD-KILRKTEVIRNTLHPKWKE--DLTILVTPQSQLLFRLADYHSFRK 591
+ + +PYL V + +I + I N L+P + + ++ + L L DY +
Sbjct: 904 VIRADPYLVVSLGKTRIKDRDNYIANNLNPVFGKMFEMNATIPIIKDLKISLMDYDLVSR 963
Query: 592 DNVIGEKKVNL 624
D++IGE V+L
Sbjct: 964 DDLIGETVVDL 974
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,571,819
Number of Sequences: 59808
Number of extensions: 393771
Number of successful extensions: 718
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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