Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11l04
(771 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 61 8e-10
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 54 2e-07
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 54 2e-07
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 53 2e-07
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 52 5e-07
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 5e-07
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 51 9e-07
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 49 5e-06
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 38 0.012
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_41042| Best HMM Match : Recep_L_domain (HMM E-Value=6.8) 30 2.4
SB_30696| Best HMM Match : ERCC4 (HMM E-Value=5.9) 30 2.4
SB_16717| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_10409| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_3054| Best HMM Match : RVT_1 (HMM E-Value=1.6e-09) 30 2.4
SB_35239| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_32739| Best HMM Match : PA (HMM E-Value=0.19) 29 4.2
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 29 5.5
SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09) 29 5.5
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16) 28 7.3
SB_17040| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0) 28 7.3
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 61.3 bits (142), Expect = 8e-10
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = +2
Query: 299 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 475
D DKFQ+ LDV+ F PEEI+ K +G I V + S++F R Y LPEG
Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEEG-FDSKEFRRCYNLPEGVD 60
Query: 476 PETVESRLSSDGVLTITAPRKVPDAVKGERKVP 574
++ +R++ DG+L + A +K P A E K P
Sbjct: 61 ESSISTRIAEDGMLHVEALKKSPPATT-ENKAP 92
Score = 48.8 bits (111), Expect = 5e-06
Identities = 28/80 (35%), Positives = 39/80 (48%)
Frame = +2
Query: 299 DKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAP 478
D KF + LDV F PEE+ VK G+ + + +RQF R + LP
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLPREVDM 154
Query: 479 ETVESRLSSDGVLTITAPRK 538
+T+ RL DGVL I A ++
Sbjct: 155 DTLVPRLGKDGVLYIEADKR 174
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 53.6 bits (123), Expect = 2e-07
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +2
Query: 296 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 472
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60
Query: 473 APETVESRLSSDGVLTITAPRKVPDAVKGERK 568
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 37.5 bits (83), Expect = 0.012
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +2
Query: 275 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 454
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 455 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 577
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 53.6 bits (123), Expect = 2e-07
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +2
Query: 296 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 472
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60
Query: 473 APETVESRLSSDGVLTITAPRKVPDAVKGERK 568
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 37.5 bits (83), Expect = 0.012
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +2
Query: 275 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 454
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 455 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 577
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +2
Query: 278 LGSSIKADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 454
L ++ + + DK ++ LDV+++ PEEIS+K G I + Y + +F R Y
Sbjct: 29 LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHG-YETSEFHRSY 87
Query: 455 ALPEGAAPETVESRLSSDGVLTITAPRKVP 544
LP+G TV SR++ DG+L I A + P
Sbjct: 88 NLPDGVDVSTVSSRITGDGLLHIEALKAEP 117
Score = 27.5 bits (58), Expect(2) = 0.10
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 257 LAAASRDLGSSIKADKDKFQVNLDVQHFSPE 349
+ A++ G K D +F V LDV FSP+
Sbjct: 125 VGASTGSAGDIAKIDDKRFTVTLDVSSFSPD 155
Score = 25.8 bits (54), Expect(2) = 0.10
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 446 RRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 577
R + LP+ +++ SRL DG L I A +++ ER+V I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEA-KRILHPTPHERQVNI 203
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 52.0 bits (119), Expect = 5e-07
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +2
Query: 296 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 472
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60
Query: 473 APETVESRLSSDGVLTITAPRKVPDAVKGERK 568
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +2
Query: 305 DKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPE 481
D+ ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEAS 297
Query: 482 TVESRLSSDGVLTITAPRKVPDAVKGERK 568
V++R+S+ G L I A + +P GE +
Sbjct: 298 NVKTRISNHGQLHIEAMKALPGPDGGEEE 326
Score = 37.5 bits (83), Expect = 0.012
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +2
Query: 275 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 454
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 321 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 379
Query: 455 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 577
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 380 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 420
Score = 37.1 bits (82), Expect = 0.016
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +2
Query: 275 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 454
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 455 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 577
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKL 186
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 52.0 bits (119), Expect = 5e-07
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +2
Query: 296 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 472
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60
Query: 473 APETVESRLSSDGVLTITAPRKVPDAVKGERK 568
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 37.5 bits (83), Expect = 0.012
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +2
Query: 275 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 454
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 455 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 577
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 51.2 bits (117), Expect = 9e-07
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +2
Query: 296 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 472
A K+ ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 2 AKKNTLEIAKLDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFEL-KEFRRTFTLPEGI 60
Query: 473 APETVESRLSSDGVLTITAPRKVP 544
PE V SR+S+ G L I A + +P
Sbjct: 61 DPENVTSRISNHGHLHIEARKALP 84
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/95 (27%), Positives = 45/95 (47%)
Frame = +2
Query: 293 KADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 472
KA +DKF + +DV F PE I V+ ++V Y + F R++ LP
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLV-NANHEVEHEGHYHAMHFNRQFVLPREV 150
Query: 473 APETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 577
+++ +RL +G L A + V A+ R++ +
Sbjct: 151 DMDSLTTRLDKEGKLHFEAKKSVAPALPPVRELMV 185
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 48.8 bits (111), Expect = 5e-06
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Frame = +2
Query: 299 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 475
+++K ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 62
Query: 476 PETVESRLSSDGVLTITAPRKV--PDAVKGERK 568
V++R+S+ G L I A + + PD K E K
Sbjct: 63 ASNVKTRISNHGQLHIEAMKALPEPDGAKKESK 95
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/99 (24%), Positives = 47/99 (47%)
Frame = +2
Query: 281 GSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYAL 460
G+ ++ DKF + +DV+ F PE I V+ ++V Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFIL 147
Query: 461 PEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 577
P +++ +RL +G L A ++ A+ R++ +
Sbjct: 148 PREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 37.5 bits (83), Expect = 0.012
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +2
Query: 266 ASRDLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFV 445
A+++ S+ D KF + LDV F PEE+ VK G+ + + +RQF
Sbjct: 13 ATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFN 71
Query: 446 RRYALPE 466
R + LP+
Sbjct: 72 RHFVLPQ 78
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 271 RCSRELSPWSEVVFGEHWTGDGSQHVVR 188
R SR SP + FG TGDG QH+V+
Sbjct: 100 RASRTPSPSDSIDFGAVETGDGLQHLVK 127
>SB_41042| Best HMM Match : Recep_L_domain (HMM E-Value=6.8)
Length = 215
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +1
Query: 484 CGIATVIRRGS--HHHRAEEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNPGCRK 642
CG RRG +H + EE RQ ++G R DR+ + G GC K
Sbjct: 157 CGWRCSKRRGRIIYHRKPEEPQETRQDHSQGGRRGDRASCIPNLRDALGARGCEK 211
>SB_30696| Best HMM Match : ERCC4 (HMM E-Value=5.9)
Length = 260
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 530 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEGTQDAE 640
PR+ P+ + R +P P+R+E +D S +D++
Sbjct: 146 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 182
>SB_16717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 735
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 530 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEGTQDAE 640
PR+ P+ + R +P P+R+E +D S +D++
Sbjct: 588 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 624
>SB_10409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 530 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEGTQDAE 640
PR+ P+ + R +P P+R+E +D S +D++
Sbjct: 34 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 70
>SB_3054| Best HMM Match : RVT_1 (HMM E-Value=1.6e-09)
Length = 829
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 530 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEGTQDAE 640
PR+ P+ + R +P P+R+E +D S +D++
Sbjct: 706 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 742
>SB_35239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 530 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEGTQDAE 640
PR+ P+ + R +P P+R+E +D S +D++
Sbjct: 100 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 136
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/68 (35%), Positives = 31/68 (45%)
Frame = +3
Query: 381 SWWKASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRDCHQTGFSPSPRRGRYPTPSRE 560
S+ K+ K RK S Q SS +R R R + D + +SP PRR +P RE
Sbjct: 605 SYRKSRDKGRKRS----QSRSSSRSRSSSYSRSRSRSPDRRKRSYSPPPRR---RSPFRE 657
Query: 561 SERCPSHR 584
R P R
Sbjct: 658 RRRSPPRR 665
>SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +1
Query: 529 AEEGTRRRQGRAKGAHRTDRSRSQGDQGPE 618
A RR + R +GA +++ +R++G++GPE
Sbjct: 352 ATPSQRRLEARKRGALKSEGTRTEGNRGPE 381
>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 530 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEGTQDAE 640
PR+ P+ + R +P P+R E +D S +D++
Sbjct: 1326 PRRPPEGKRRRRILPQVPPRPIRHEAQDDSSSAEDSD 1362
>SB_32739| Best HMM Match : PA (HMM E-Value=0.19)
Length = 319
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +3
Query: 213 PVQCSPKTTSDHGDNSRLHLVTSVP---A*RPTRTSSKSIWTCSTS 341
P+ P++ D R L S P A T T S S+WTCS S
Sbjct: 273 PLDLKPRSNVMRVDEGRYELKLSCPFHCAFSHTLTDSHSLWTCSNS 318
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 695 RQYFGTN*NAPLQNHPTYFRHPGFPRSGP*SPCERD 588
R+ FGT PLQ + YF + + G +PC+R+
Sbjct: 608 RERFGTPIQLPLQLYDEYFFNVDYLTDGALAPCDRN 643
>SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09)
Length = 1111
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 503 SDGVLTITAPRKVPDAVKGE-RKVPIAQTGPVRKEI 607
SD T + PD KGE RKVP+A P++ EI
Sbjct: 285 SDSSPTSDPVSEFPDVFKGEVRKVPLAVREPLKNEI 320
>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
Length = 411
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 141 TGPVVLLIKILDWR*PRTTCWLPSPVQCSPKTTSDHGDNSRLHLVTSVPA*RPTRTSS 314
TG + + L+ PR +C P PV SP+ + H VT P PT ++S
Sbjct: 253 TGEIEMKDLTLEIPTPRESCQFPGPVSVSPRVATTHSPPPISPRVT--PEKTPTASTS 308
>SB_17040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 521 ITAPRKVPDAVKGERKVPIAQTG 589
+T+ RKVP+ V +RKVP TG
Sbjct: 42 VTSQRKVPNMVTSQRKVPNMVTG 64
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 521 ITAPRKVPDAVKGERKVP 574
+T+ RKVP+ V G RKVP
Sbjct: 52 VTSQRKVPNMVTGRRKVP 69
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 518 TITAPRKVPDAVKGERKVP 574
T+T+ RKVP+ V RKVP
Sbjct: 91 TVTSQRKVPNMVSSRRKVP 109
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 476 PETVESRLSSDGVLTITAPRKVPDAVKGERKVP 574
P TV SR + +T+ RKVP+ V RKVP
Sbjct: 109 PNTVTSRRKVPNM--VTSRRKVPNMVTSRRKVP 139
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 431 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVP 574
SR+ V P V SR + +T+ R+VP+ V G+RKVP
Sbjct: 204 SRRKVPNMVTSRRKIPNMVTSRRKVPNM--VTSRREVPNMVTGQRKVP 249
>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -1
Query: 633 SWVPSLWSLISLRTGPVCAMGTFRSPLTASGTFLGAVMVRTPSDDSRDSTV 481
S++P + ++ L+ G V +GT++ L G F + P + S D+ +
Sbjct: 733 SFLPQVDQIVVLQDGRVSEVGTYKELLANRGAFAEFLKTFAPEEKSGDAAL 783
>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1238
Score = 28.3 bits (60), Expect = 7.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 484 CGIATVIRRGSHHHRAEE 537
CG++ ++RRG +HH EE
Sbjct: 23 CGVSRILRRGYNHHLNEE 40
>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2492
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 527 APRKVPDAVKGERKVPIAQTGPVRKEIKDQSEGT 628
+PR V V+ ER++ ++Q+GP E+ +Q T
Sbjct: 1384 SPRSVKPVVRSERRIKLSQSGP-SSEMTEQKAQT 1416
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,266,154
Number of Sequences: 59808
Number of extensions: 533798
Number of successful extensions: 1812
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1795
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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