Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l01
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51929| Best HMM Match : ARID (HMM E-Value=1.2)                      58   8e-09
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)                   30   2.3  
SB_4961| Best HMM Match : Suf (HMM E-Value=0.00086)                    29   3.1  
SB_11074| Best HMM Match : efhand (HMM E-Value=1.79366e-43)            28   7.2  
SB_30172| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_51929| Best HMM Match : ARID (HMM E-Value=1.2)
          Length = 391

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 29/77 (37%), Positives = 42/77 (54%)
 Frame = +1

Query: 88  KSQLITDGYAILEDFLHVAECDEIKAAGLEFTENLPDIEERATFSTTEKTHLKDKYFLES 267
           +SQ  +DGY ++E+FL + E  E++ A     ++L   +   +   T    + D YFL S
Sbjct: 312 QSQFASDGYVVIENFLSLDEVQELREAMRNIVDDLDLSQNPLSVFKTGDDQVGDDYFLTS 371

Query: 268 NDKIRCFFEEGAIDADG 318
            DKIR F EEGA D  G
Sbjct: 372 GDKIRPFMEEGAFDKQG 388


>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1331

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +3

Query: 195 RHRGESNVLDNRENTFKG*IFPRKQRQDKVFLRRGSHRRRWKSYSRTGDFIKQGRSRTAS 374
           + R + N +  ++      + P+K  +D+  L+R   RR W+   R       G+S   S
Sbjct: 215 KQRADGNTVGPKQRVDGNTVVPKKSLKDENDLQRAPKRRNWRKNMRRPSSGSIGQSMADS 274

Query: 375 P 377
           P
Sbjct: 275 P 275


>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
          Length = 667

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
 Frame = -1

Query: 619 LETATDSRFELWLLQELSRSQLGELALCTDMLRLDVEPLRNQCQGS*K-------YTCFA 461
           L+ A ++  E+ ++QE   +     A C D   +D       CQ   K       Y C  
Sbjct: 461 LDNALEADVEVQVVQESCPTPTYSAA-CLDSDAIDKCQTDRDCQDQFKCCFDGCRYNCIL 519

Query: 460 PQPAR*SQALCKCSSRVHYTCN 395
           P+P     + C   SR+ Y CN
Sbjct: 520 PKPDPAEHSTCPVMSRIPYMCN 541


>SB_4961| Best HMM Match : Suf (HMM E-Value=0.00086)
          Length = 809

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -1

Query: 718 VDKPLQVYHRLKPRHCLH--LGCG-SNVCALLTCESLETATDSRFELWLLQELSRSQLGE 548
           V+  + V+H LKP H LH   G G  NV +LL  E++  A  +    W L E  R+ + +
Sbjct: 718 VENTVWVHHSLKPLHHLHSLRGLGHMNVGSLLQAEAVFRADAA----WCLAEYYRNDMSQ 773

Query: 547 LA 542
            A
Sbjct: 774 AA 775


>SB_11074| Best HMM Match : efhand (HMM E-Value=1.79366e-43)
          Length = 779

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 4   SCVATQYRRYLNSFCFCKFIASIMHDSIKSQLITDGYAILEDFL 135
           S   +++RR L SFCF       +H   K++L  DG     +FL
Sbjct: 127 SVTMSEFRRVLESFCFPMTQEQFVHIMKKAKLNRDGSVNYLEFL 170


>SB_30172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 701

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 670 LHLGCGSNVCALLTCESLETATDSRFELWLLQE 572
           LH     N C LLT +    A + RFEL +  E
Sbjct: 276 LHSNIDRNDCGLLTQQQFRAAIEGRFELGMSDE 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,316,815
Number of Sequences: 59808
Number of extensions: 506765
Number of successful extensions: 1277
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)