Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k23
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.1  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    27   1.1  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   1.1  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    25   4.5  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    25   5.9  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 269 SLLLFSISRQLNTHSSLSLSLIFTHSIHVFL*CRH 373
           SL +F     +NTHS+L L   F+HS   FL C H
Sbjct: 37  SLAVFPSIPLINTHSNLCLFSNFSHS--CFLFCTH 69


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 136 FCSNLCAYYIYARFFF*ISSYFVCTILNQSSFYSP 240
           F + LC YYIY+      SS FV T+   S+F  P
Sbjct: 461 FYALLCCYYIYSYKLIPHSSIFVYTVPIISTFLFP 495


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +2

Query: 80  DKIFQRASVVTQYSDSP----NVF-VLTCVLITYMQDFFFK 187
           D + Q AS+VTQY DS     NVF V TC  I   Q + F+
Sbjct: 316 DPVIQIASIVTQYGDSTPFVRNVFCVDTCSQIVGTQVYEFQ 356


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 26  FRRSDEATHIYLVILVRNDKIFQRASVVTQYSDSPNVFVLTCVLITYMQDFFFK 187
           F+ + + +   L + V    +F+  S++  Y  +PNV V + V+ T    F FK
Sbjct: 248 FQEAYDRSGYILNVTVSCGSLFEMPSLLN-YITAPNVLVWSAVVATCSVPFLFK 300


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 170 QDFFFKFPVILCV 208
           +DFFFKF  ++CV
Sbjct: 64  EDFFFKFCTVICV 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,308
Number of Sequences: 5004
Number of extensions: 32285
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)