Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k23
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80024-2|AAK18892.1|  327|Caenorhabditis elegans Serpentine rece...    29   2.3  
AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical ...    27   5.3  
AF047661-2|AAK71389.1|  886|Caenorhabditis elegans Hypothetical ...    27   5.3  
AF047661-1|AAK71388.2|  915|Caenorhabditis elegans Hypothetical ...    27   5.3  
U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related...    27   9.2  
AC024881-4|AAK71412.2|  314|Caenorhabditis elegans Serpentine re...    27   9.2  

>U80024-2|AAK18892.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein125 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 185 KFPVILCVQF*INLLFIHLLGG-VGTANFSLLLFSISRQLNTHSSLSLSL 331
           +F   L VQF   LLFI  LG  VG   FS+LL   ++ LN    + LSL
Sbjct: 240 RFVKALSVQF---LLFITCLGAPVGLFTFSMLLNDYNQGLNNLCIIGLSL 286


>AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical
           protein M70.1 protein.
          Length = 931

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 139 KNIRTVAVLSHNTRSLKDLIISYKNN 62
           KN  TVA+L+   +S  DLI+ +K N
Sbjct: 477 KNRETVALLATKLKSESDLIVEFKEN 502


>AF047661-2|AAK71389.1|  886|Caenorhabditis elegans Hypothetical
           protein M70.3b protein.
          Length = 886

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 139 KNIRTVAVLSHNTRSLKDLIISYKNN 62
           KN  TVA+L+   +S  DLI+ +K N
Sbjct: 467 KNRETVALLATKLKSESDLIVEFKEN 492


>AF047661-1|AAK71388.2|  915|Caenorhabditis elegans Hypothetical
           protein M70.3a protein.
          Length = 915

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 139 KNIRTVAVLSHNTRSLKDLIISYKNN 62
           KN  TVA+L+   +S  DLI+ +K N
Sbjct: 496 KNRETVALLATKLKSESDLIVEFKEN 521


>U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related
           family protein 2 protein.
          Length = 933

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 192 QLFCVYNFKSIFFLFTY 242
           Q+FCVY   +IFF F Y
Sbjct: 401 QIFCVYTGVAIFFAFIY 417


>AC024881-4|AAK71412.2|  314|Caenorhabditis elegans Serpentine
           receptor, class sx protein5 protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 224 LLFIHLLGGVGTANFSLLLFSISRQLNTHSSLSLSLIFTHSI 349
           +LF ++ G  G  NF +L  + ++  +  S L  +L F+H I
Sbjct: 18  ILFFNIFGLFGNVNFIVLTATKNKLKSKSSYLQCALCFSHII 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,488,076
Number of Sequences: 27780
Number of extensions: 181539
Number of successful extensions: 413
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)