Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11k23
(478 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel... 29 2.2
At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel... 29 2.2
At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel... 29 2.2
At4g15233.1 68417.m02334 ABC transporter family protein similar ... 29 2.2
At5g61800.1 68418.m07755 pentatricopeptide (PPR) repeat-containi... 28 3.8
At4g03660.1 68417.m00501 hypothetical protein similar to A. thal... 27 5.0
At3g54070.1 68416.m05978 ankyrin repeat family protein contains ... 27 6.6
At4g07440.1 68417.m01142 replication protein-related weak simila... 27 8.7
>At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 710
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 71 VRNDKIFQRASVVTQYSDSPNVFVLTCVLITYMQDFFFKFPVI 199
V KIF Y + +FV +C+L ++ FFF PVI
Sbjct: 76 VSEKKIFDPQDKFLLYCNK--LFVASCILSVFVDPFFFYLPVI 116
>At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 717
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 71 VRNDKIFQRASVVTQYSDSPNVFVLTCVLITYMQDFFFKFPVI 199
V KIF Y + +FV +C+L ++ FFF PVI
Sbjct: 83 VSEKKIFDPQDKFLLYCNK--LFVASCILSVFVDPFFFYLPVI 123
>At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 717
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 71 VRNDKIFQRASVVTQYSDSPNVFVLTCVLITYMQDFFFKFPVI 199
V KIF Y + +FV +C+L ++ FFF PVI
Sbjct: 83 VSEKKIFDPQDKFLLYCNK--LFVASCILSVFVDPFFFYLPVI 123
>At4g15233.1 68417.m02334 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1168
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 254 GTANFSLLLFSISRQLNTHSSLSLSLIFTHSIHVFL*CRHNFKSI 388
G N S +LFS++ + N SL+ T ++H+ R +F +I
Sbjct: 1024 GINNCSTVLFSVATERNVFYRERFSLVVTPNVHIAFTLRSSFYAI 1068
>At5g61800.1 68418.m07755 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 499
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 391 AKFITNSFITNSIKQNSLLINTSF 462
A+FIT+ I+N KQNS+ N F
Sbjct: 25 AQFITSGRISNDFKQNSVFANVLF 48
>At4g03660.1 68417.m00501 hypothetical protein similar to A.
thaliana hypothetical protein T6P5.8, GenBank accession
number AC005970
Length = 100
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 196 NWKFKKKILHICNKHTS*NKNIRTVAVLSHNTRSLKDLII 77
NWK K L ICN + I T+ + T S++ L I
Sbjct: 15 NWKINVKFLSICNHPPKSHGEITTMILHDEKTSSIRVLRI 54
>At3g54070.1 68416.m05978 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 574
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/83 (21%), Positives = 40/83 (48%)
Frame = +2
Query: 86 IFQRASVVTQYSDSPNVFVLTCVLITYMQDFFFKFPVILCVQF*INLLFIHLLGGVGTAN 265
IF + V +S ++ + + + + F++ + + F ++ LFI ++ +
Sbjct: 453 IFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMFGLSALFISIISMILAFT 512
Query: 266 FSLLLFSISRQLNTHSSLSLSLI 334
FS++L + + +SLSL LI
Sbjct: 513 FSMILIRVEK-----ASLSLVLI 530
>At4g07440.1 68417.m01142 replication protein-related weak
similarity to Replication Protein A 70 kDa DNA-binding
subunit (RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein) (DMRPA1)
(GI:2498844)(SP:Q24492) [Drosophila melanogaster]
Length = 261
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -1
Query: 205 TQNNWKFKKKILHICNKHTS*NKNIRTVAVLSHNTRSLKDLIISYKNN*INMRRFIRP 32
T NWK KIL I N + + I T+ +L + + D I N R F++P
Sbjct: 12 TSTNWKINVKILSIWNHPPNSHGEITTM-ILHDDKNNRVDATIPQGNYHNPFRPFLKP 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,530,842
Number of Sequences: 28952
Number of extensions: 152504
Number of successful extensions: 335
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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