Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11k22
(210 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 25 1.8
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 25 1.8
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 24 2.4
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 24 2.4
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 24 3.2
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 23 4.2
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 23 4.2
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 23 7.3
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 23 7.3
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 22 9.6
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 22 9.6
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 23 RSLMHGVLKGFGARITNLLI 82
RSL+HGVL G ++T +
Sbjct: 458 RSLLHGVLNRLGYKVTQTFV 477
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 111 LQFDIHLNMNLHSKIENTNDSYHVKYFLKNKKK 209
L +HL + N + Y +YFL NKK+
Sbjct: 422 LTSSLHLKYLSFESLGNLKERYVRQYFLSNKKR 454
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 24.2 bits (50), Expect = 2.4
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -1
Query: 111 IIHIIT*SVG-ISKFVILAPNPFKTPCIKDRHPEKK 7
I HI T ++ ++K V + P+P CI+D++ +K+
Sbjct: 74 IEHINTDALAAVTKSVAVEPSPATLRCIQDKYLQKQ 109
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 65 ITNLLIPTDYVIICIITIRYTFKYEFA 145
I +L+IP Y + C+I + T +YE A
Sbjct: 233 IQSLVIPPIYKVQCMIHLLCTIEYEKA 259
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 60 APNPFKTPCIKDRHPE 13
AP FK+ C K HPE
Sbjct: 77 APPNFKSVCTKTNHPE 92
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 23.4 bits (48), Expect = 4.2
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -3
Query: 154 ILECKFIFKCISNCN 110
++ + IFKC+S+CN
Sbjct: 43 LMTSQHIFKCLSSCN 57
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +2
Query: 41 VLKGFGARITNLLIPTDYVI 100
+LKG AR+ +L + T++V+
Sbjct: 305 ILKGHAARVNHLSLSTEHVL 324
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 114 QFDIHLNMNLHSKIENTNDSYHVKYFL 194
++D+ + L S + N+SY +YFL
Sbjct: 382 EYDLDASDFLSSSVHKNNNSYLDQYFL 408
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -1
Query: 186 ILRDKNHLYFQFWNAN 139
+L +N +Y QFW+ N
Sbjct: 100 VLDKQNFVYLQFWSLN 115
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 111 IIHIIT*SVGISKFVILAPNPFK 43
++H+ + SVGI KF + N K
Sbjct: 668 VLHLSSPSVGIRKFAVALLNDVK 690
>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 206
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 4 FFFLRMTILNARGFEGIW 57
FFF MT+ +GF G +
Sbjct: 121 FFFSWMTLAEGKGFRGAY 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 837,040
Number of Sequences: 5004
Number of extensions: 13407
Number of successful extensions: 29
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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