Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k22
         (210 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.77 
SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)             25   7.1  
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      25   9.4  
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 25   9.4  

>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 117  FDIHLNMNLHSKIENTNDSYHVK 185
            F  H N+NLHS++      YH K
Sbjct: 989  FKTHTNLNLHSRVHANEKPYHCK 1011


>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
          Length = 2374

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 78   SKFVILAPNPFKTPCIKDRHPEKKK 4
            S F IL P P  T   ++RHP  +K
Sbjct: 1418 SSFAILEPQPSATFQTRERHPNGEK 1442



 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 78   SKFVILAPNPFKTPCIKDRHPEKKK 4
            S F IL P P  T   ++RHP  +K
Sbjct: 1694 SSFAILEPQPSATFQTRERHPNGEK 1718


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 16  RMTILNARGFEGIWRENHEFTNTY 87
           R+ I+NA  F+G+W++     NT+
Sbjct: 127 RLIIVNAVYFKGVWKKEFGEENTF 150


>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1507

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 78  SKFVILAPNPFKTPCIKDRHPEK 10
           S    LAPNP +T  ++D H EK
Sbjct: 142 STLASLAPNPPQTSALEDDHYEK 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,605,618
Number of Sequences: 59808
Number of extensions: 78882
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 16,821,457
effective HSP length: 48
effective length of database: 13,950,673
effective search space used: 292964133
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)