Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k22
         (210 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   1.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   2.8  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    19   4.9  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              19   4.9  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    19   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   8.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   8.5  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 1.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 38  GVLKGFGARITNLLIPTD 91
           G L G GA ITN  I  D
Sbjct: 127 GSLTGIGAAITNAAIAYD 144


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.2 bits (40), Expect = 2.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 80  LVNS*FSRQIPSKPRALRIVIL 15
           +VN  FS  I SKP+  R  +L
Sbjct: 258 MVNQKFSELIQSKPQHARRKVL 279


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 19.4 bits (38), Expect = 4.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 98  IICIITIRYTFKYE 139
           I C+I   YT KY+
Sbjct: 13  ITCVIAEDYTTKYD 26


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 19.4 bits (38), Expect = 4.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 163 VFSILECKFIFKCISNCNNT 104
           +  ILEC F +K I+   N+
Sbjct: 116 ISKILECFFKYKTINQILNS 135


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 19.4 bits (38), Expect = 4.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 98  IICIITIRYTFKYE 139
           I C+I   YT KY+
Sbjct: 13  ITCVIAEDYTTKYD 26


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 84  GISKFVILAPNPF 46
           G S+F+ LAP+ F
Sbjct: 131 GASRFLELAPDSF 143


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -3

Query: 139 FIFKCISNCNN 107
           F+F C ++C N
Sbjct: 302 FLFACTNSCMN 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,813
Number of Sequences: 438
Number of extensions: 793
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3039192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)