Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k22
         (210 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28010.1 68416.m03497 hypothetical protein contains Pfam prof...    25   6.9  
At5g46600.1 68418.m05737 expressed protein contains Pfam profile...    25   9.1  
At5g36090.1 68418.m04349 hypothetical protein contains Pfam prof...    25   9.1  

>At3g28010.1 68416.m03497 hypothetical protein contains Pfam profile
           PF03778: Protein of unknown function (DUF321)
          Length = 261

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 40  GFEGIWRENHEFT 78
           GF G WREN+EFT
Sbjct: 194 GF-GFWRENYEFT 205



 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 40  GFEGIWRENHEFT 78
           GF G WREN+EFT
Sbjct: 222 GF-GFWRENYEFT 233


>At5g46600.1 68418.m05737 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005;
           expression supported by MPSS
          Length = 539

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 123 IHLNMNLHSKIENTNDSYHVKYF 191
           + L  NLHS I N + + HV Y+
Sbjct: 389 LFLGSNLHSNITNKHLNGHVSYY 411


>At5g36090.1 68418.m04349 hypothetical protein contains Pfam
          profile PF03778: Protein of unknown function (DUF321)
          Length = 141

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 55 WRENHEFT 78
          WRENHEFT
Sbjct: 41 WRENHEFT 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,061,453
Number of Sequences: 28952
Number of extensions: 61159
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 12,070,560
effective HSP length: 49
effective length of database: 10,651,912
effective search space used: 213038240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)