Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k21
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.6  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 113 LFYCYFT*LYKKIEI*LVPKQSRYGS-QWR 27
           LFY   T LYKKI+   VP  S +G   WR
Sbjct: 282 LFYYQLTDLYKKIKK-AVPPLSLHGQLLWR 310


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 412 VHFVRN--SRGYVEHDDSTLSLNIVSVSKTTKLLLSGCV 302
           +H ++N  S+  V  DD+     ++S++K T  ++SG V
Sbjct: 394 MHMLKNADSQLLVISDDNIHIKGVISLNKLTSYVISGIV 432


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +1

Query: 493 RKVKAKTIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 603
           +K  A+ +V   +       + A    N  +PF WLA
Sbjct: 193 KKANARAVVLFTRAEDARGILEAARRSNLSQPFQWLA 229


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +2

Query: 179  TTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK 322
            T F  RH     +        +++  L  +T +G +++ +W   G+EK
Sbjct: 984  TPFEHRHFISGIDSNLHVYAPLKIS-LDVNTPKGNMQWKIWPMKGEEK 1030


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +1

Query: 493 RKVKAKTIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 603
           +K  A+ +V   +       + A    N  +PF WLA
Sbjct: 283 KKANARAVVLFTRAEDARGILEAARRSNLSQPFQWLA 319


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 412 PNWHRDLVRVCEGIPIV 462
           PNW  + V+ C+G+  V
Sbjct: 107 PNWSYNDVKYCDGLTSV 123


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 345 YPSLRPPNFSC 313
           YP +R P+F C
Sbjct: 112 YPGMRAPSFRC 122


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 345 YPSLRPPNFSC 313
           YP +R P+F C
Sbjct: 112 YPGMRAPSFRC 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,761
Number of Sequences: 438
Number of extensions: 4231
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)