Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11k20
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 173 2e-44
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 93 3e-20
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 2.0
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 27 2.0
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 27 3.5
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos... 26 4.6
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 26 4.6
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 6.0
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 6.0
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 26 6.0
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 173 bits (421), Expect = 2e-44
Identities = 91/192 (47%), Positives = 122/192 (63%), Gaps = 2/192 (1%)
Frame = +2
Query: 134 MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXXXX 313
M +L ET AGYAIFK D+ L + D L ++ +PEGAS ++KL++F KFE
Sbjct: 1 MFILTETAAGYAIFKAKDKL-LKKRDALIEDLKSPEGASNLLKLQSFAKFESTVDALDNV 59
Query: 314 XXXIEGXXXXXXXXXXXXXXXXEVQDQLLVGDSKLGSAIREK--FDLQCVSNTNVQELLR 487
+EG + L+V D KLG+AI + + + +S+++VQ+L R
Sbjct: 60 SALVEGKVSSKLSSLLEGLSDSK-SSTLVVADPKLGNAINKLPGLEFEIISDSSVQDLYR 118
Query: 488 CIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKELN 667
IR + SL++GL ++ AM+LGL+HSLSR+KLKFSPDK+DTMIVQA LLDDLDKELN
Sbjct: 119 GIREHLSSLISGLAPSDLNAMSLGLSHSLSRHKLKFSPDKVDTMIVQAIALLDDLDKELN 178
Query: 668 NYXMRCREWYGW 703
Y MR REWYGW
Sbjct: 179 TYAMRVREWYGW 190
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 93.5 bits (222), Expect = 3e-20
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 5/193 (2%)
Frame = +2
Query: 140 VLFETPAGYAIFKLLDESKLS-EIDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXXXXX 316
+L+E+ GY++F ++ +++ + + VV+L++F+ F++
Sbjct: 5 LLYESATGYSLFDVVGADQIAAKTKEVQLSLQDISKFGKVVQLRSFIPFKNAAHALENAN 64
Query: 317 XXIEGXXXXXXXXXXXXXXXXEVQDQ---LLVGDSKLGSAIREKFD-LQCVSNTNVQELL 484
EG + + L V D L ++I+ + D ++C ++ Q+LL
Sbjct: 65 DISEGVLNDFLKNFLELNLPKASKKKKVSLGVQDKNLATSIKSEIDAIECDTSELTQDLL 124
Query: 485 RCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKEL 664
R IR D LL L + LGL HS SR K+KF+ ++ D MI+QA +LD LDK++
Sbjct: 125 RGIRFHGDKLLKQLSPGDFERAQLGLGHSYSRAKVKFNVNRNDNMIIQAIAILDQLDKDI 184
Query: 665 NNYXMRCREWYGW 703
N + MR +EWY W
Sbjct: 185 NTFAMRMKEWYSW 197
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 422 SAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLK 592
SA+ + L+C++ + L +C ++ SL+ G+P T L SL K K
Sbjct: 922 SALIDPEFLKCLNEDQITALKKCHAAEHYSLILGMPGTGKTTTISSLIRSLLAKKKK 978
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 495 RIHRSSSWTLVFDTHCKS--NFSLMALPSLESPTRS 394
R HRSS V+ HC + ++ LPSL TR+
Sbjct: 221 REHRSSGKNFVYCDHCSNVYHYDCSPLPSLNKETRN 256
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 625 NNHSVYFVRREL*FVPRKRVSQAQSHSCHFFFR 527
+ HS Y +RREL KR+ + H C FF R
Sbjct: 119 DQHSSY-LRRELNSHREKRLQDTRVHCCLFFIR 150
>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 465 LMSRNCSGVFAHRWTVS 515
+ SR C VFAHRW S
Sbjct: 8 IYSRKCECVFAHRWKPS 24
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 119 YTTIQQIQSVSFNILSFIRKILSLTNTTLPRRCRS 15
YT++ I S +FN F RK N LP + S
Sbjct: 231 YTSVASISSPTFNYDYFARKAFLTRNKPLPEKTGS 265
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 181 QLKYGIARRCLE*NQHTGSTLIQLFNKYNQYH 86
Q+ YG+++ + G+T +Q FN+Y H
Sbjct: 921 QIAYGVSKFFTSLTRALGNTSVQDFNEYKMIH 952
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 537 SFLGSPARRLSICERIHRSSSWTLVFDT 454
S+L +P RLSI + + SSS T +T
Sbjct: 436 SYLAAPKERLSISDNMSSSSSQTATVNT 463
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 137 LVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFV 277
L L E Y LLDE KLS + +Y+ G +K+ +F+
Sbjct: 1471 LPLVEFKYVYKEISLLDEQKLSLLHQVYEIRKLNNGLYPTIKVDDFL 1517
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,662
Number of Sequences: 5004
Number of extensions: 48824
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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