Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11k20
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 196 1e-50
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 196 1e-50
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 103 1e-22
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 55 1e-12
12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152... 44 1e-04
12_02_1165 + 26633371-26633679,26635183-26635276,26635732-266358... 33 0.17
11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502 30 1.6
11_06_0541 + 24771145-24775479 30 1.6
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519... 29 3.6
06_03_1186 - 28260487-28262112,28262205-28262345,28262429-282625... 28 8.3
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 196 bits (478), Expect = 1e-50
Identities = 97/190 (51%), Positives = 129/190 (67%)
Frame = +2
Query: 134 MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXXXX 313
MLVLFETPAG+A+FK+LDE KL ++++L++EF T + A VV+LK F KFE+
Sbjct: 1 MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAA 60
Query: 314 XXXIEGXXXXXXXXXXXXXXXXEVQDQLLVGDSKLGSAIREKFDLQCVSNTNVQELLRCI 493
I+ E L V DSKLG+AI+EK + C+ N+ V EL+R +
Sbjct: 61 TLIIDSKPTKGLRKFLQKHCEGET---LAVADSKLGNAIKEKLKIDCLHNSAVMELMRGL 117
Query: 494 RSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKELNNY 673
R+Q+ L++GL +++ M+LGL+HSLSRYKLKFSP+K+DTMI+QA LLDDLDKELN Y
Sbjct: 118 RNQLTELISGLGAQDLGPMSLGLSHSLSRYKLKFSPEKVDTMIIQAIGLLDDLDKELNTY 177
Query: 674 XMRCREWYGW 703
MR REWYGW
Sbjct: 178 AMRVREWYGW 187
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 196 bits (478), Expect = 1e-50
Identities = 97/190 (51%), Positives = 129/190 (67%)
Frame = +2
Query: 134 MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXXXX 313
MLVLFETPAG+A+FK+LDE KL ++++L++EF T + A VV+LK F KFE+
Sbjct: 1 MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAA 60
Query: 314 XXXIEGXXXXXXXXXXXXXXXXEVQDQLLVGDSKLGSAIREKFDLQCVSNTNVQELLRCI 493
I+ E L V DSKLG+AI+EK + C+ N+ V EL+R +
Sbjct: 61 TLIIDSKPTKGLRKFLQKHCEGET---LAVADSKLGNAIKEKLKIDCLHNSAVMELMRGL 117
Query: 494 RSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKELNNY 673
R+Q+ L++GL +++ M+LGL+HSLSRYKLKFSP+K+DTMI+QA LLDDLDKELN Y
Sbjct: 118 RNQLTELISGLGAQDLGPMSLGLSHSLSRYKLKFSPEKVDTMIIQAIGLLDDLDKELNTY 177
Query: 674 XMRCREWYGW 703
MR REWYGW
Sbjct: 178 AMRVREWYGW 187
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 103 bits (247), Expect = 1e-22
Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 6/197 (3%)
Frame = +2
Query: 131 SMLVLFETPAGYAIFKLLDESKLSE-IDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXX 307
++ +LFE+ +GY +F ++ + +D + + VKL F F
Sbjct: 2 ALYLLFESASGYGLFHAYGIDEIGQSVDAVRASVVDLDRFGKAVKLAAFTPFSSAVDALN 61
Query: 308 XXXXXIEGXXXXXXXXXXXXXXXXEVQDQ-----LLVGDSKLGSAIREKFDLQCVSNTNV 472
EG + + L V + K+GS I E + C SN V
Sbjct: 62 QCNAISEGIMTDELRSFLELNLPKPKEGKKAKYSLGVVEPKVGSHISEVTGIPCQSNEFV 121
Query: 473 QELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDL 652
QELLR +R D ++ L K ++ LGL HS SR K+KF+ +++D M++QA LLD L
Sbjct: 122 QELLRGVRLHFDRFISELKKSDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTL 181
Query: 653 DKELNNYXMRCREWYGW 703
DK++N++ MR REW+GW
Sbjct: 182 DKDINSFSMRVREWFGW 198
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 54.8 bits (126), Expect(2) = 1e-12
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +2
Query: 554 LGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKELNNYXMR 682
LGL HS SR K+KF+ +++D M++QA LLD LDK++N++ MR
Sbjct: 187 LGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMR 229
Score = 35.5 bits (78), Expect(2) = 1e-12
Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 6/152 (3%)
Frame = +2
Query: 131 SMLVLFETPAGYAIFKLLDESKLSE-IDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXX 307
++ +LFE+ +GYA+F ++ + +D + S VKL F F
Sbjct: 2 ALYLLFESASGYALFHAHGVDEIGQGVDAARASVLELQRFSKAVKLAGFSPFSSAVDALN 61
Query: 308 XXXXXIEGXXXXXXXXXXXXXXXX-----EVQDQLLVGDSKLGSAIREKFDLQCVSNTNV 472
EG + + + V + K+GS I E + C N V
Sbjct: 62 QCNAISEGIMTDELRSFLELNLPKVKEGKKAKYSVGVMEPKVGSHISEATGIPCQCNEFV 121
Query: 473 QELLRCIRSQMDSLLAGLPKKEMTAMALGLAH 568
QELLR +R D + L + T + H
Sbjct: 122 QELLRGVRLHFDHFIDQLKVVDFTFALVSTGH 153
>12_01_1116 +
11914352-11914415,11915049-11915158,11915254-11915295,
11916263-11916430,11916506-11916682,11916848-11917051,
11917125-11917319
Length = 319
Score = 44.0 bits (99), Expect = 1e-04
Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 6/186 (3%)
Frame = +2
Query: 116 YKCASSMLVLFETPAGYAIFKLLDESKL--SEIDNLYQEFNTPEGASTVVKLKNFVKFED 289
Y C +LVLFETP+G+A+F + + + + + ++ F S + LK F + +D
Sbjct: 26 YHCLI-VLVLFETPSGFAMFGMSGDRLIQPNALQEIWANFGVDYRVSKFIWLKEFREIKD 84
Query: 290 XXXXXXXXXXXIEGXXXXXXXXXXXXXXXXEVQDQLLVGDSKLGSAIREKFDLQCVSNTN 469
I ++ VG + I + C+ +
Sbjct: 85 KSSA-------INHDTGVSCDLAEMIMKWHHPGQKMAVGKPEYKEIIERSLSVPCMFDEI 137
Query: 470 VQELLRCIRSQMDSLLAG----LPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQC 637
V E++ +++ M L+ L K + M+ GL L+RY L P+ + I++ C
Sbjct: 138 VMEVMWGLKNLMHVLVPQEKMKLSKDDYLPMSQGLYMLLNRYGLDVKPEMVTDSIIKLAC 197
Query: 638 LLDDLD 655
L D +
Sbjct: 198 FLLDCE 203
>12_02_1165 +
26633371-26633679,26635183-26635276,26635732-26635822,
26636112-26636199,26636300-26636341,26636648-26636809,
26636915-26637094,26637280-26637447,26637977-26638195
Length = 450
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 140 VLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFED 289
+LFETP+G+A+F++ D ++++ F P A VV+ F++ D
Sbjct: 172 MLFETPSGFAMFRVSD-VLFRYPEDIWSSFTDPHTAHQVVRTIGFIEVGD 220
>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
Length = 1385
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +2
Query: 413 KLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLK 592
KLG I +K +L T + +L C+RS +++ K+E T L +SR LK
Sbjct: 935 KLGVVIDDKDNLLKNLLTAISDLCECLRSLSITIVPCSTKREGTPSIGDLPEYISRC-LK 993
Query: 593 FSPDKIDTMIVQ 628
+ P ++++ +Q
Sbjct: 994 YRPKLLESLCLQ 1005
>11_06_0541 + 24771145-24775479
Length = 1444
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +2
Query: 413 KLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLK 592
KLG I +K +L T + +L C+RS +++ K+E T L +SR LK
Sbjct: 993 KLGVVIDDKDNLLKNLLTAISDLCECLRSLSITIVPCSTKREGTPSIGDLPEYISRC-LK 1051
Query: 593 FSPDKIDTMIVQ 628
+ P ++++ +Q
Sbjct: 1052 YRPKLLESLCLQ 1063
>10_08_0570 +
18851451-18851723,18851894-18851928,18851929-18851998,
18852089-18852187,18852276-18852365,18852430-18852920,
18853015-18853102,18853204-18853245,18853548-18853574,
18853817-18853996,18854249-18854416,18854501-18854710
Length = 590
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 140 VLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVK 280
+LFETP+G+ +F++ D ++++ F P A V+ F++
Sbjct: 360 MLFETPSGFVMFRVSD-VLFRYPEDIWSSFTDPRTAHQAVRTIGFIE 405
>06_03_1186 -
28260487-28262112,28262205-28262345,28262429-28262573,
28262964-28263067,28263324-28263456,28263904-28264013,
28265144-28265167
Length = 760
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +2
Query: 455 VSNTNVQELLRCIRSQMDSL---LAGLPKKEMTAMALGLAHSLSRYKLKFSPDK 607
V N +++ C + M+++ L GLPKKE ++ + A S + L P K
Sbjct: 318 VQKANKKDVRPCEKELMEAVELDLNGLPKKEFGSLKVPEAESKKTFALNVKPKK 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,153,698
Number of Sequences: 37544
Number of extensions: 297884
Number of successful extensions: 581
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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