Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k20
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                 97   2e-20
SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   3e-19
SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)                     31   0.91 
SB_11837| Best HMM Match : Arylesterase (HMM E-Value=1.6e-10)          30   2.1  
SB_17685| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.26)             30   2.1  
SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_42991| Best HMM Match : fn3 (HMM E-Value=7.2e-08)                   29   3.7  
SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_59206| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 45/101 (44%), Positives = 65/101 (64%)
 Frame = +2

Query: 401 VGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSR 580
           V DSK+G+AI+E  ++ C S   + E+LR IR   D ++ GL     +   LGL HS SR
Sbjct: 29  VADSKIGAAIQESLNICCDSGGVILEVLRGIRMHFDKMIKGLTGAMASKAQLGLGHSYSR 88

Query: 581 YKLKFSPDKIDTMIVQAQCLLDDLDKELNNYXMRCREWYGW 703
            K+KF+  ++D MI+Q+  LLD LDK++N + MR REWY +
Sbjct: 89  AKVKFNIHRVDNMIIQSIALLDQLDKDINTFSMRIREWYSY 129


>SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 40/44 (90%), Positives = 41/44 (93%)
 Frame = +2

Query: 572 LSRYKLKFSPDKIDTMIVQAQCLLDDLDKELNNYXMRCREWYGW 703
           LSRYKLKFSPDK+DTMIVQA  LLDDLDKELNNY MRCREWYGW
Sbjct: 57  LSRYKLKFSPDKVDTMIVQAISLLDDLDKELNNYVMRCREWYGW 100


>SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)
          Length = 317

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +2

Query: 467 NVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRY--KLKFSPDKIDTMIVQAQCL 640
           NVQ+  + + + +  LLAGL   E+  +A      +++Y   +KF+ D+   +IV A+  
Sbjct: 23  NVQDWSKDVFASLKQLLAGLESGELAQIAADKFREINQYLCNVKFTGDQKKALIVPAKEA 82

Query: 641 LDDLDK 658
             +++K
Sbjct: 83  YGEVEK 88


>SB_11837| Best HMM Match : Arylesterase (HMM E-Value=1.6e-10)
          Length = 263

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 128 SSMLVLFETPAGYAIFKLLDESKLSEIDNLYQ-EFNTPEGASTVVKLKNF 274
           SS L LF +   Y +   +D S      NLY  + N P  A  ++ LKNF
Sbjct: 56  SSGLALFSSGLRYTVQLTIDPSIKLRKGNLYLLDLNEPNSAPVILTLKNF 105


>SB_17685| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.26)
          Length = 553

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = +2

Query: 422 SAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSP 601
           +A  E FDL+C +N+N  +   C+   M    A +       ++ G   +++R   K   
Sbjct: 446 AAADEGFDLECRANSNTLQATVCLNKDMGKTAAQISVMSSVNLSSG---AVTRIMNKCPA 502

Query: 602 DKIDTMIVQAQCLLDDLD 655
              DT+I+  + + D  D
Sbjct: 503 QSTDTVILSPKQVKDICD 520


>SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 390 INSLSVTLSWEVPLEKNLTYNVYQILMSRNCSG 488
           +NS ++TLSW VP       +VY ++    C+G
Sbjct: 279 LNSSAITLSWSVPNNTGGRTDVYYLIECFKCNG 311


>SB_42991| Best HMM Match : fn3 (HMM E-Value=7.2e-08)
          Length = 769

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 354 KLLRSMFVKRFRINSLSVTLSWEVPLEKNLTYNVYQILMSRN 479
           K +R   VK   + S +V++ W+ PLE  L    Y+I  S N
Sbjct: 636 KDIRPRSVKAVSLGSNAVSVEWQPPLEATLYIQGYKIFKSVN 677


>SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 122 TYTTIQQIQSVSFNILSFIRKILSLTNTTLPRRCRS 15
           T   +Q+  S S N+ SF   +L   N TLP  CR+
Sbjct: 203 TRNALQENSSSSMNVTSFNSSLLIDVNLTLPITCRN 238


>SB_59206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 558 PKAIAVISFLGSPARRLSICERIHRSSSWTLVFDTHCKSNFSLMALPSLESP 403
           P+   ++   G     L  C  IH   S    FDT  +   SL+A P++ SP
Sbjct: 291 PQRPLIVKVKGRKVGFLGYCNVIHNDMSANSHFDTCRRRRGSLLAGPAIYSP 342


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,015,693
Number of Sequences: 59808
Number of extensions: 359451
Number of successful extensions: 828
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)