Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k20
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron...   190   1e-48
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron...   186   2e-47
At5g27140.1 68418.m03239 SAR DNA-binding protein, putative stron...   101   1e-30
At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil...    99   2e-21
At1g56110.1 68414.m06443 nucleolar protein Nop56, putative simil...    98   6e-21

>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score =  190 bits (462), Expect = 1e-48
 Identities = 93/190 (48%), Positives = 125/190 (65%)
 Frame = +2

Query: 134 MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXXXX 313
           +LVL+ET AG+A+FK+ DE K++ +++L +EF+TP+ A  +VKLK F KF++        
Sbjct: 2   VLVLYETAAGFALFKVKDEGKMANVEDLCKEFDTPDSARKMVKLKAFEKFDNTSEALEAV 61

Query: 314 XXXIEGXXXXXXXXXXXXXXXXEVQDQLLVGDSKLGSAIREKFDLQCVSNTNVQELLRCI 493
              +EG                E    L V DSKLG+ I+EK  + C+ N  V ELLR +
Sbjct: 62  AKLLEGAPSKGLRKFLKANCQGET---LAVADSKLGNVIKEKLKIDCIHNNAVMELLRGV 118

Query: 494 RSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKELNNY 673
           RSQ   L++GL  +++  M+LGL+HSL+RYKLKFS DK+DTMI+QA  LLDDLDKELN Y
Sbjct: 119 RSQFTELISGLGDQDLAPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTY 178

Query: 674 XMRCREWYGW 703
            MR REWYGW
Sbjct: 179 AMRVREWYGW 188


>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score =  186 bits (452), Expect = 2e-47
 Identities = 96/190 (50%), Positives = 124/190 (65%)
 Frame = +2

Query: 134 MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXXXX 313
           ML+LFETP G+AIFK+L+E KLS +++L  EF+T + A  +VKL  F KF++        
Sbjct: 1   MLILFETPGGFAIFKVLNEGKLSNVEDLGNEFSTAKLARKMVKLVAFDKFDNTAEALEAV 60

Query: 314 XXXIEGXXXXXXXXXXXXXXXXEVQDQLLVGDSKLGSAIREKFDLQCVSNTNVQELLRCI 493
              +EG                E    L V DSKLG+ I+EK  + CV N  V ELLR I
Sbjct: 61  AKLLEGTPSKGLRKFLKANCVGET---LAVADSKLGNIIKEKLKIVCVHNNAVMELLRGI 117

Query: 494 RSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDLDKELNNY 673
           RSQ+  L++GL  +++  M+LGL+HSL+RYKLKFS DK+DTMI+QA  LLDDLDKELN Y
Sbjct: 118 RSQLTELISGLGDQDLGPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTY 177

Query: 674 XMRCREWYGW 703
            MR REW+GW
Sbjct: 178 AMRVREWFGW 187


>At5g27140.1 68418.m03239 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 445

 Score =  101 bits (243), Expect(2) = 1e-30
 Identities = 53/102 (51%), Positives = 67/102 (65%)
 Frame = +2

Query: 395 LLVGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSL 574
           L V D KLG  I EK D++CV N  V ELLR +RSQ+  LL+GL   ++  ++L L+H L
Sbjct: 57  LAVADPKLGDIITEKLDIECVHNDAVMELLRGVRSQLTELLSGLDDNDLAPVSLELSHIL 116

Query: 575 SRYKLKFSPDKIDTMIVQAQCLLDDLDKELNNYXMRCREWYG 700
           +RYKLK + DK  TMI+ +  LLDDLDKELN Y     E YG
Sbjct: 117 ARYKLKITSDK--TMIILSISLLDDLDKELNTYTTSVCELYG 156



 Score = 49.2 bits (112), Expect(2) = 1e-30
 Identities = 25/49 (51%), Positives = 34/49 (69%)
 Frame = +2

Query: 134 MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVK 280
           MLVLFET  G+A+FK+LDE KLS +++L  EF + E A   + L  F+K
Sbjct: 1   MLVLFETSGGFALFKVLDEGKLSNVEDLGTEFYSAESARR-MGLHKFLK 48


>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
           to XNop56 protein [Xenopus laevis] GI:14799394; contains
           Pfam profile PF01798: Putative snoRNA binding domain
          Length = 499

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 45/101 (44%), Positives = 64/101 (63%)
 Frame = +2

Query: 401 VGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSR 580
           V + K+GS I E   + C SN  V ELLR +R   D  +  L   ++    LGLAHS SR
Sbjct: 98  VSEPKIGSCIFEATKIPCQSNEFVHELLRGVRQHFDRFIKDLKPGDLEKAQLGLAHSYSR 157

Query: 581 YKLKFSPDKIDTMIVQAQCLLDDLDKELNNYXMRCREWYGW 703
            K+KF+ +++D M++QA  +LD LDK++N++ MR REWY W
Sbjct: 158 AKVKFNVNRVDNMVIQAIFMLDTLDKDINSFAMRVREWYSW 198


>At1g56110.1 68414.m06443 nucleolar protein Nop56, putative similar
           to XNop56 protein [Xenopus laevis] GI:14799394; contains
           Pfam profile PF01798: Putative snoRNA binding domain
          Length = 522

 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 6/197 (3%)
 Frame = +2

Query: 131 SMLVLFETPAGYAIFKLLDESKLSE-IDNLYQEFNTPEGASTVVKLKNFVKFEDXXXXXX 307
           +M V++E+ +GY +F++    ++ +  + +    +       VV+L  F  FE       
Sbjct: 2   AMYVIYESSSGYGLFEVHGLDEIGQNTEAVRTSVSDLSRFGRVVQLTAFHPFESALDALN 61

Query: 308 XXXXXIEGXXXXXXXXXXXXXXXXEVQDQ-----LLVGDSKLGSAIREKFDLQCVSNTNV 472
                 EG                  + +     L + + KLGS I E   + C SN  V
Sbjct: 62  QVNAVSEGVMTDELRSFLELNLPKVKEGKKPKFSLGLAEPKLGSHIFEATKIPCQSNEFV 121

Query: 473 QELLRCIRSQMDSLLAGLPKKEMTAMALGLAHSLSRYKLKFSPDKIDTMIVQAQCLLDDL 652
            ELLR +R   D  +  L   ++    LGLAHS SR K+KF+ +++D M++QA  +LD L
Sbjct: 122 LELLRGVRQHFDRFIKDLKPGDLEKSQLGLAHSYSRAKVKFNVNRVDNMVIQAIFMLDTL 181

Query: 653 DKELNNYXMRCREWYGW 703
           DK++N++ MR REWY W
Sbjct: 182 DKDINSFAMRVREWYSW 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,251,968
Number of Sequences: 28952
Number of extensions: 247390
Number of successful extensions: 515
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)