Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11k19
(556 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A) 184 3e-47
At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi... 184 4e-47
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo... 183 6e-47
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ... 36 0.018
At4g25220.1 68417.m03629 transporter, putative similar to glycer... 28 3.6
At3g56410.2 68416.m06274 expressed protein 28 4.8
At3g56410.1 68416.m06273 expressed protein 28 4.8
At5g12370.1 68418.m01455 exocyst complex component Sec10-related... 27 8.4
>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
Length = 150
Score = 184 bits (449), Expect = 3e-47
Identities = 92/140 (65%), Positives = 104/140 (74%)
Frame = +2
Query: 41 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 220
M+ RK K K +V VTLGP GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 221 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 400
KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA AQ
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALA 119
Query: 401 XXXMKIGRIEDVTPVPSDST 460
MKIGRIEDVTP+P+DST
Sbjct: 120 RSGMKIGRIEDVTPIPTDST 139
>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
to 40S ribosomal protein S14 GB:P19950 [Zea mays]
Length = 150
Score = 184 bits (448), Expect = 4e-47
Identities = 92/140 (65%), Positives = 103/140 (73%)
Frame = +2
Query: 41 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 220
M+ RK K K E VTLGP GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVET-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 221 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 400
KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA AQ
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALA 119
Query: 401 XXXMKIGRIEDVTPVPSDST 460
MKIGRIEDVTP+P+DST
Sbjct: 120 RSGMKIGRIEDVTPIPTDST 139
>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
ribosomal protein S14 -Zea mays,PIR2:A30097
Length = 150
Score = 183 bits (446), Expect = 6e-47
Identities = 91/140 (65%), Positives = 103/140 (73%)
Frame = +2
Query: 41 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 220
M+ RK K K E VTLGP GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVE-NVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 221 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 400
KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA AQ
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALA 119
Query: 401 XXXMKIGRIEDVTPVPSDST 460
MKIGRIEDVTP+P+DST
Sbjct: 120 RSGMKIGRIEDVTPIPTDST 139
>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
putative contains Pfam profile: PF00411: Ribosomal
protein S11
Length = 314
Score = 35.9 bits (79), Expect = 0.018
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +2
Query: 113 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 292
ET + HI N+TFV VTD G +G + + + Y A A+++ +
Sbjct: 190 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 249
Query: 293 CKTLGITALHIKL 331
K +G+ ++ +K+
Sbjct: 250 AKAMGLKSVVVKV 262
>At4g25220.1 68417.m03629 transporter, putative similar to
glycerol-3-phosphate transporter (glycerol 3-phosphate
permease) [Homo sapiens] GI:7543982
Length = 504
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 495 YSLRPLRPPFLRVESDGTGVTSSMR 421
Y P+ PP + E DGT + S+MR
Sbjct: 225 YLFLPVNPPTVEAERDGTEIDSTMR 249
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 262 YVGGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDW 420
Y G+ C E +NSW + A + N +P+ W S + +YE W
Sbjct: 1040 YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1090
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 262 YVGGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDW 420
Y G+ C E +NSW + A + N +P+ W S + +YE W
Sbjct: 993 YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1043
>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
low similarity to SP|O00471 Exocyst complex component
Sec10 (hSec10) {Homo sapiens}
Length = 858
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 209 TGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 316
+GG+++K D +E + A V EK + LGI A
Sbjct: 777 SGGLRLKRDLNEYVGFVKSFGAPSVDEKFELLGIIA 812
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,954,039
Number of Sequences: 28952
Number of extensions: 251640
Number of successful extensions: 602
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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