Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k18
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    28   1.1  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   1.5  
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po...    28   1.5  
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    27   2.0  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   2.6  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    27   3.5  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   3.5  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    26   4.6  
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    26   6.0  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   6.0  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   8.0  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    25   8.0  

>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +3

Query: 435 NGQIISAVSIEEICREIDDIFKSIDRLASATSTLRNRKPDVVQCSISAGDLSFDDTIDQI 614
           + QII A+ + +   E+D I +S +   S TS +R     V+ C+ S G  SF   ++  
Sbjct: 527 SSQIIEALRLHKPLEELDIILQSEEIQNSETSAVRL----VMSCAYSLGSRSFSHALNVF 582

Query: 615 DE 620
           ++
Sbjct: 583 EK 584


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
 Frame = +3

Query: 348 LSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDIFKSIDRLASAT 527
           L+D ++ DY   + N  NN  N QQ   V+ +    V +      +   + S+   +S+ 
Sbjct: 207 LADSNMEDYTRAVMNYINNSENTQQ-ASVSPEESQLVMLSRFVFSVASGWVSVLMNSSSA 265

Query: 528 STLRNRK-PDVVQCSISAGDLSFDDTIDQIDEEKIDQCI 641
               N + P  +  ++ +G+++FD+ +  +    + Q +
Sbjct: 266 HQSNNLEFPSSISGNVESGNVAFDEFLSLLHAGNLVQAM 304


>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 218

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 330 RKVARQLSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDD 491
           RKV + L +K +ID N +   +   EA++Q     +     A+S  +I + I++
Sbjct: 110 RKVLQSLHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEE 163


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +3

Query: 459 SIEEICREIDDIFKSIDRLASATSTLR-NRKPDVVQCSISAGDLSFDDTIDQIDEEKIDQ 635
           S+    R +  + KS++  A A  T +  R+ ++++      D + DD +++ DEE+ D+
Sbjct: 105 SMRGATRLLTGMNKSMNIPAMARITQQFERENEIMEQRQEMIDENMDDALEEDDEEEADE 164

Query: 636 CIEEAFEEL 662
            + +  +E+
Sbjct: 165 LVNKVLDEI 173


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
 Frame = +3

Query: 279 DLKKTTFDSAQLLKKVRRKV--ARQLSDKSIIDYNDFIRNLQNN-----EANDQQFFFVN 437
           D  +T  D+  L+ K+  +   A Q+S++ I D  +++ + Q       ++ + Q    +
Sbjct: 451 DWDRTLVDNGALISKLYTETVEAEQMSNR-IDDGLEYVSSSQQELFKLLDSYETQLETFD 509

Query: 438 GQIISAVSIEE--ICREIDDIFKSIDRLASATSTLRNRKPD 554
           G+  SA+++E        DDI   +DRL     T+ N+  D
Sbjct: 510 GRATSALNVERERAFGVADDILSRLDRLGEDLGTVINQMND 550


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +3

Query: 162 LLRNEQWMKLEEDWKPVDLDEDRTEEDNEPAMTTMLSALDLKKTTFDSAQLLKKVRRKV- 338
           +L+N+ + KL  +   VD   D TE+     +  +L++  L     +   +L+K  R + 
Sbjct: 92  ILKNKDFRKLLNENLHVDFPADLTEDAQRNTVARILNSKQLSDAIRNINSILEKYLRFLN 151

Query: 339 --ARQLSDKSII 368
              ++LSDK  +
Sbjct: 152 PDLQELSDKKAV 163


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 282  LKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQ 398
            LK+T     +LLKK+  +  + +   SI+ Y  +IR+++
Sbjct: 1739 LKETVKKQEKLLKKLNLRQEQLIPRSSILVYESYIRDIE 1777


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = -2

Query: 263 CRHSWFVVFLCPVFIQVHRLPVFFEFHPLLVTEQDGFQV**FCTHSNVDTLTS 105
           C  ++F  F C  F+ V+ LP+FFE   L+ + + G ++  +   ++V +L S
Sbjct: 297 CLGNFFNAF-CS-FVIVYELPLFFETTLLMPSSEAGVRIFPYVISTSVGSLCS 347


>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 159 ILLRNEQWMKLEEDWKPVDLDEDRTEEDNEPAM 257
           ++  N      +E WK  D+DED+  +  EP +
Sbjct: 42  VVKENHLHFGFDEKWKTYDVDEDKVLDYLEPKL 74


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
 Frame = +3

Query: 273 ALD--LKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQNNEAN---DQQFFFVN 437
           ALD   KK    +  LLK+++ K       K   +++   R ++   A    D ++  + 
Sbjct: 617 ALDTLFKKLPTAAPVLLKRIKTKDQEWRRSKR--EWSKIWRQIEKKNAQAAFDDRYCRIE 674

Query: 438 GQIISAVSIEEICREIDDIFK 500
           G+    +S   I R+IDDI++
Sbjct: 675 GRDRRGLSYSRILRDIDDIYQ 695


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +3

Query: 249  PAMTTMLSALDLKKTTFDSAQLLKKVRRKVARQLSD-KSIIDYNDFIRNLQNNEAN-DQQ 422
            P+    +S L L  +  D  +L+    R++ +  SD KSI + N+  RNLQN  +N D++
Sbjct: 847  PSAELEISKLQLDVSACD--RLVAGEERRILQLKSDLKSIRNNNERKRNLQNKISNMDKE 904

Query: 423  FFFVN 437
               +N
Sbjct: 905  VEAIN 909


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 573 SAGDLSFDDTIDQIDEEKIDQCIEEAFEELSGSFTSV 683
           S GDL      D+I ++K++Q  +   EE+S   +SV
Sbjct: 249 STGDLITKKEFDKILQQKVEQLKQSLKEEMSNYKSSV 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,279
Number of Sequences: 5004
Number of extensions: 43176
Number of successful extensions: 190
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)